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The map label for this gene is ytcD [H]

Identifier: 17544929

GI number: 17544929

Start: 233543

End: 233938

Strand: Direct

Name: ytcD [H]

Synonym: RSc0210

Alternate gene names: 17544929

Gene position: 233543-233938 (Clockwise)

Preceding gene: 17544927

Following gene: 17544933

Centisome position: 6.28

GC content: 60.86

Gene sequence:

>396_bases
ATGAAAAAACAGACTAACGGCGAGGAAGAGATCAACATGCACGACGAGATGCGGCGCGCTTTCGCTCTGCTCTCGGGCAA
GTGGAAGCTGGAAATCATGTGGTTGCTCAGCCAACGGGTCTATCGCTTCGGCGAACTGAGGAAGGCAATCCCGGGCATCA
CACAGCACATGCTGACGGCGCAGCTTCGTGAGCTGGAGGCGGACGGTTTGGTGTCGCGCACGGTCTTCGCGGAAGTGCCC
CCGCGGGTCGAGTACGAGATCACGCAGAAGGCCCGAGGGCTCGGGCCAACGATGGAGGCGCTCACGGCCTGGTGGAGCGA
GTACGGACGAAGCATCCCGGTAAAGTCGACTTCGCGTGGGCGCAAAGCCAAGGTATCCAAGCCGAAGGCAGCATGA

Upstream 100 bases:

>100_bases
TAACCATGGAGTTCTCCTTTGCGAATAATTCAATCGACTTGGCGCTAGGATGTCGGCCAAGATGAAGCATCGCAAGTAGG
ATGAAAAAACGGCGCTTAGT

Downstream 100 bases:

>100_bases
CGATAGCGGGGCACCGTCTGACGTCGATGATCCTCGGCACGTAGATGGTTGTTAAGGGTACGGCTGACACGCGGTCAGGT
CGATGCCCTTGTCTCAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKQTNGEEEINMHDEMRRAFALLSGKWKLEIMWLLSQRVYRFGELRKAIPGITQHMLTAQLRELEADGLVSRTVFAEVP
PRVEYEITQKARGLGPTMEALTAWWSEYGRSIPVKSTSRGRKAKVSKPKAA

Sequences:

>Translated_131_residues
MKKQTNGEEEINMHDEMRRAFALLSGKWKLEIMWLLSQRVYRFGELRKAIPGITQHMLTAQLRELEADGLVSRTVFAEVP
PRVEYEITQKARGLGPTMEALTAWWSEYGRSIPVKSTSRGRKAKVSKPKAA
>Mature_131_residues
MKKQTNGEEEINMHDEMRRAFALLSGKWKLEIMWLLSQRVYRFGELRKAIPGITQHMLTAQLRELEADGLVSRTVFAEVP
PRVEYEITQKARGLGPTMEALTAWWSEYGRSIPVKSTSRGRKAKVSKPKAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=87, Percent_Identity=32.183908045977, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15003; Mature: 15003

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQTNGEEEINMHDEMRRAFALLSGKWKLEIMWLLSQRVYRFGELRKAIPGITQHMLTA
CCCCCCCCHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRELEADGLVSRTVFAEVPPRVEYEITQKARGLGPTMEALTAWWSEYGRSIPVKSTSRG
HHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
RKAKVSKPKAA
CCCCCCCCCCC
>Mature Secondary Structure
MKKQTNGEEEINMHDEMRRAFALLSGKWKLEIMWLLSQRVYRFGELRKAIPGITQHMLTA
CCCCCCCCHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRELEADGLVSRTVFAEVPPRVEYEITQKARGLGPTMEALTAWWSEYGRSIPVKSTSRG
HHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
RKAKVSKPKAA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]