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The map label for this gene is pecS [H]

Identifier: 17544868

GI number: 17544868

Start: 169848

End: 170321

Strand: Reverse

Name: pecS [H]

Synonym: RSc0149

Alternate gene names: 17544868

Gene position: 170321-169848 (Counterclockwise)

Preceding gene: 17544871

Following gene: 17544867

Centisome position: 4.58

GC content: 70.89

Gene sequence:

>474_bases
ATGGACAGCCTCCTTGCGCAATGGCGGCGCGAGCGCCCCGACCTCGACCCCAGCCCGATGGCCGTATGCGGCGAAGTCTG
GCGCGCCGGCGAACGCCTGCGCCAGGGCGTGGTCGCGAACATCGCCGACGCCGACCTGGATCCGGCAGGCTTCGACGTGC
TGCTGACGCTGCGCCGGCAGGGGCGCGGCAACACCCTCTCGCCATCTGCGCTGGCCAAGGACATGATGCTGTCCACCTCG
GCCATGACCAACCGGCTCGACCGGCTCGAAAAGCGCGGACTGATCGCCCGCCAGACCGACCCCGACGACCGTCGCGGCCT
GCGCATCGTGCTGACCGATGCAGGCTTCGCGCTGGTCGATGGGCTGGTCGCCTCGCACCTGGTGACGGAGGAGCGCATGC
TGGCGGCGTTGAGCCAGGCCGAGCGCGCGATGCTGCGCGAGCTGCTGGAGAAGATTGGCGGGCCGGTGGCCTGA

Upstream 100 bases:

>100_bases
ACGATCCGATGAATCTTCACATCAAATAGTTTGATGTCGAAATACTAGGGCGAGACATCCGATGGGTCAACCCGATCCCA
TGACCGCACAAGGGGCACCG

Downstream 100 bases:

>100_bases
TCACACGACCGGGGAAGGGAAACATCCATGCTGAAGCGGTTCAAGCGCCTGTTCAGCCGGCCGGCACCGGCACGGGACGC
CGAGGCCGACGCGCTGTCCG

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MDSLLAQWRRERPDLDPSPMAVCGEVWRAGERLRQGVVANIADADLDPAGFDVLLTLRRQGRGNTLSPSALAKDMMLSTS
AMTNRLDRLEKRGLIARQTDPDDRRGLRIVLTDAGFALVDGLVASHLVTEERMLAALSQAERAMLRELLEKIGGPVA

Sequences:

>Translated_157_residues
MDSLLAQWRRERPDLDPSPMAVCGEVWRAGERLRQGVVANIADADLDPAGFDVLLTLRRQGRGNTLSPSALAKDMMLSTS
AMTNRLDRLEKRGLIARQTDPDDRRGLRIVLTDAGFALVDGLVASHLVTEERMLAALSQAERAMLRELLEKIGGPVA
>Mature_157_residues
MDSLLAQWRRERPDLDPSPMAVCGEVWRAGERLRQGVVANIADADLDPAGFDVLLTLRRQGRGNTLSPSALAKDMMLSTS
AMTNRLDRLEKRGLIARQTDPDDRRGLRIVLTDAGFALVDGLVASHLVTEERMLAALSQAERAMLRELLEKIGGPVA

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17231; Mature: 17231

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLLAQWRRERPDLDPSPMAVCGEVWRAGERLRQGVVANIADADLDPAGFDVLLTLRRQ
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
GRGNTLSPSALAKDMMLSTSAMTNRLDRLEKRGLIARQTDPDDRRGLRIVLTDAGFALVD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHH
GLVASHLVTEERMLAALSQAERAMLRELLEKIGGPVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDSLLAQWRRERPDLDPSPMAVCGEVWRAGERLRQGVVANIADADLDPAGFDVLLTLRRQ
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
GRGNTLSPSALAKDMMLSTSAMTNRLDRLEKRGLIARQTDPDDRRGLRIVLTDAGFALVD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHH
GLVASHLVTEERMLAALSQAERAMLRELLEKIGGPVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]