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The map label for this gene is 17544846

Identifier: 17544846

GI number: 17544846

Start: 148456

End: 149898

Strand: Reverse

Name: 17544846

Synonym: RSc0127

Alternate gene names: NA

Gene position: 149898-148456 (Counterclockwise)

Preceding gene: 17544847

Following gene: 17544845

Centisome position: 4.03

GC content: 69.16

Gene sequence:

>1443_bases
GTGCAACCCTGTCCTTCGGAGGCGCCGCGCGTCCTGCATGCGCTCACGCGGCGCGGCATGGCGCTGGCGCTCGCGGCCAC
GCTGTCGCTCGTGCTGTCCGCCTGCGGCGGCGGGGGCGATGACACGGCCGCGGCCACCACGGCGCCGCCGTCGAGCAACG
CCGTGACGCCGTCACCCTCACCGGCGCCCGCGCCGACCTACTCGGTGGGCGGCACGGTAGCCGGCCTGGGCTCGGGCCTG
TCGGTGAAGCTGCTGAACAACGGCGGCGACGCGGTCACCGTCACCGCCAACGGCAACTTCCAGTTCCCCACCGCGCTGGC
GAGCGGCGCGCAATACGCGGCGACCGTGGGCACGCGCCCATCGGGGCAACAGTGCACGATCGCCAACGACAGCGGCACGA
TGGGCTCGGCCAACGTCACCAACATCGCCGTGACCTGTTCGACGCGGCCGCTGTTCGCCTATACGGCCAACTCGAACGAC
AACACGGTCTCCGCCTACACGCTGGACCCGACCACCGGCGCACCGACCCTGATCGGCACACCCATCTCGGTAGGCCAAGG
GCCGCTGTCGCTGATCGCGGACAAGGCCGGCAAGTTCGTCTACGTCGTCGACGGCAACGACAACAGCGTCACCACGCTGG
CGATCGATTCGGAGACCGGCCTGCTGACCATCTCGGGCACGCCGGCCACAACGGGGATGCAGCCGTTCAACATCGCGCGC
ACGCCGGCCAGCACGTTCGCGTACACCACCAACTTCGGCGACAACACCCTGTCGGGCTTCTCGATCAACGCGACGACCGG
CGTGCTCACCTCGATCGGCACCATCGCGGCGGGCACCAATCCGTACACCATCGTCATCAACAAGGCCGGCACCTTCGCCT
ACGTGGTGAACGCGGCCAGCGGGGCGGGCACGCCATCGGCCATGGTCTTCTCGATCAACGGCGCCACCGGCGCGCTCACA
GCGGTGGGCAGCCCGGTCGCCACCGGCAACGCACCGTTCTACATCGCGCTGCATCCGGCCGGCACGTTCGCCTACGTGGC
CAACTCGCAGGACAACACCGTCCAGGTATATGCCATCAACCAGACCACCGGCGCGCTGACCGCCGTGGGCTCGCCGGTGG
CCACCGGGCAGGGGCCGATCCCGATCGCCATCCATCCGTCCGGCCTGTTCGCGTACGTGGGCAACGTGTTCGATAACACG
GTCAGCCTCTACGCCATCAACACAGGCACCGGCGCGCTGACGCTCAAGAGCACGCTCGCCACCGGCAACGATCCGCTGGC
GATCACGCTCAACGATGCCGGCAGCATCGCCTACATCGTCAACGGCGTGGACCATGACGTGGTCGCCTACGCGGTGGACA
GCAGCACCGGTGCGCTGACCTCGGTCGCTACCGCGCAGACCGGGCTGCTGCCGCGCGCGTTCGCCATCGTGGCGGTGCCG
TAA

Upstream 100 bases:

>100_bases
CTCCTATGCTTCCCCAAACAGCGCGCGAAGAACGGGGGCCGCCATGACCGCAGAGCATCCCGCCCAGACGGGGCAATCAG
CAATGGCAGGTCGGGGGGCG

Downstream 100 bases:

>100_bases
ATCAGGCAAGCTCACCGGCCTGGTGCCGGTTGCCGAAGAAACGACGATGCCCTGCCCGCGCGAGGCATCGTCACATCTGG
CCGCAGCCGACGGCGTCAAG

Product: hemagglutinin-related protein

Products: NA

Alternate protein names: Secreted Protein; Hemagglutinin-Related Protein; Surface Layer Protein; Surface Antigen Gene; Triple Helix Repeat-Containing Collagen; Cell Surface Protein; Exported Lactonase; 3-Carboxymuconate Cyclase; YVTN Beta-Propeller Repeat-Containing Protein; Pectin Lyase Fold Domain Protein Virulence Factor; Glycine-Rich Cell Wall Protein; YVTN Family Beta-Propeller Repeat Protein; Lactonase; Transmembrane Protein; 3-Carboxymuconate Cyclase-Like Protein; 40-Residue YVTN Family Beta-Propeller Repeat Protein; Fibronectin Type III Domain Protein; 3-Carboxymuconate Cyclase-Like; Lipoprotein; Exported Protein; YVTN Family Beta-Propeller Repeat Family Protein

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MQPCPSEAPRVLHALTRRGMALALAATLSLVLSACGGGGDDTAAATTAPPSSNAVTPSPSPAPAPTYSVGGTVAGLGSGL
SVKLLNNGGDAVTVTANGNFQFPTALASGAQYAATVGTRPSGQQCTIANDSGTMGSANVTNIAVTCSTRPLFAYTANSND
NTVSAYTLDPTTGAPTLIGTPISVGQGPLSLIADKAGKFVYVVDGNDNSVTTLAIDSETGLLTISGTPATTGMQPFNIAR
TPASTFAYTTNFGDNTLSGFSINATTGVLTSIGTIAAGTNPYTIVINKAGTFAYVVNAASGAGTPSAMVFSINGATGALT
AVGSPVATGNAPFYIALHPAGTFAYVANSQDNTVQVYAINQTTGALTAVGSPVATGQGPIPIAIHPSGLFAYVGNVFDNT
VSLYAINTGTGALTLKSTLATGNDPLAITLNDAGSIAYIVNGVDHDVVAYAVDSSTGALTSVATAQTGLLPRAFAIVAVP

Sequences:

>Translated_480_residues
MQPCPSEAPRVLHALTRRGMALALAATLSLVLSACGGGGDDTAAATTAPPSSNAVTPSPSPAPAPTYSVGGTVAGLGSGL
SVKLLNNGGDAVTVTANGNFQFPTALASGAQYAATVGTRPSGQQCTIANDSGTMGSANVTNIAVTCSTRPLFAYTANSND
NTVSAYTLDPTTGAPTLIGTPISVGQGPLSLIADKAGKFVYVVDGNDNSVTTLAIDSETGLLTISGTPATTGMQPFNIAR
TPASTFAYTTNFGDNTLSGFSINATTGVLTSIGTIAAGTNPYTIVINKAGTFAYVVNAASGAGTPSAMVFSINGATGALT
AVGSPVATGNAPFYIALHPAGTFAYVANSQDNTVQVYAINQTTGALTAVGSPVATGQGPIPIAIHPSGLFAYVGNVFDNT
VSLYAINTGTGALTLKSTLATGNDPLAITLNDAGSIAYIVNGVDHDVVAYAVDSSTGALTSVATAQTGLLPRAFAIVAVP
>Mature_480_residues
MQPCPSEAPRVLHALTRRGMALALAATLSLVLSACGGGGDDTAAATTAPPSSNAVTPSPSPAPAPTYSVGGTVAGLGSGL
SVKLLNNGGDAVTVTANGNFQFPTALASGAQYAATVGTRPSGQQCTIANDSGTMGSANVTNIAVTCSTRPLFAYTANSND
NTVSAYTLDPTTGAPTLIGTPISVGQGPLSLIADKAGKFVYVVDGNDNSVTTLAIDSETGLLTISGTPATTGMQPFNIAR
TPASTFAYTTNFGDNTLSGFSINATTGVLTSIGTIAAGTNPYTIVINKAGTFAYVVNAASGAGTPSAMVFSINGATGALT
AVGSPVATGNAPFYIALHPAGTFAYVANSQDNTVQVYAINQTTGALTAVGSPVATGQGPIPIAIHPSGLFAYVGNVFDNT
VSLYAINTGTGALTLKSTLATGNDPLAITLNDAGSIAYIVNGVDHDVVAYAVDSSTGALTSVATAQTGLLPRAFAIVAVP

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47430; Mature: 47430

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00191 CYTOCHROME_B5_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPCPSEAPRVLHALTRRGMALALAATLSLVLSACGGGGDDTAAATTAPPSSNAVTPSPS
CCCCCCCHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCC
PAPAPTYSVGGTVAGLGSGLSVKLLNNGGDAVTVTANGNFQFPTALASGAQYAATVGTRP
CCCCCCEECCCCEEECCCCCEEEEEECCCCEEEEEECCCEECCHHHHCCCCEEEEECCCC
SGQQCTIANDSGTMGSANVTNIAVTCSTRPLFAYTANSNDNTVSAYTLDPTTGAPTLIGT
CCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCCEEEEC
PISVGQGPLSLIADKAGKFVYVVDGNDNSVTTLAIDSETGLLTISGTPATTGMQPFNIAR
CCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCEEEC
TPASTFAYTTNFGDNTLSGFSINATTGVLTSIGTIAAGTNPYTIVINKAGTFAYVVNAAS
CCCCCEEEEECCCCCCCCCEEEECHHHHHHHCCEEEECCCCEEEEEECCCCEEEEEECCC
GAGTPSAMVFSINGATGALTAVGSPVATGNAPFYIALHPAGTFAYVANSQDNTVQVYAIN
CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
QTTGALTAVGSPVATGQGPIPIAIHPSGLFAYVGNVFDNTVSLYAINTGTGALTLKSTLA
CCCCEEEECCCCCCCCCCCEEEEECCCCCEEHHHHHHCCEEEEEEEECCCCEEEEEEEEC
TGNDPLAITLNDAGSIAYIVNGVDHDVVAYAVDSSTGALTSVATAQTGLLPRAFAIVAVP
CCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEHHHHCCCCCEEEEEEEEC
>Mature Secondary Structure
MQPCPSEAPRVLHALTRRGMALALAATLSLVLSACGGGGDDTAAATTAPPSSNAVTPSPS
CCCCCCCHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCC
PAPAPTYSVGGTVAGLGSGLSVKLLNNGGDAVTVTANGNFQFPTALASGAQYAATVGTRP
CCCCCCEECCCCEEECCCCCEEEEEECCCCEEEEEECCCEECCHHHHCCCCEEEEECCCC
SGQQCTIANDSGTMGSANVTNIAVTCSTRPLFAYTANSNDNTVSAYTLDPTTGAPTLIGT
CCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCCEEEEC
PISVGQGPLSLIADKAGKFVYVVDGNDNSVTTLAIDSETGLLTISGTPATTGMQPFNIAR
CCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCEEEC
TPASTFAYTTNFGDNTLSGFSINATTGVLTSIGTIAAGTNPYTIVINKAGTFAYVVNAAS
CCCCCEEEEECCCCCCCCCEEEECHHHHHHHCCEEEECCCCEEEEEECCCCEEEEEECCC
GAGTPSAMVFSINGATGALTAVGSPVATGNAPFYIALHPAGTFAYVANSQDNTVQVYAIN
CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
QTTGALTAVGSPVATGQGPIPIAIHPSGLFAYVGNVFDNTVSLYAINTGTGALTLKSTLA
CCCCEEEECCCCCCCCCCCEEEEECCCCCEEHHHHHHCCEEEEEEEECCCCEEEEEEEEC
TGNDPLAITLNDAGSIAYIVNGVDHDVVAYAVDSSTGALTSVATAQTGLLPRAFAIVAVP
CCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEHHHHCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA