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The map label for this gene is rfaB [C]

Identifier: 17232686

GI number: 17232686

Start: 6192395

End: 6193555

Strand: Reverse

Name: rfaB [C]

Synonym: all5194

Alternate gene names: 17232686

Gene position: 6193555-6192395 (Counterclockwise)

Preceding gene: 17232687

Following gene: 17232685

Centisome position: 96.57

GC content: 47.72

Gene sequence:

>1161_bases
GTGAGAGTTGCTTATATTTGTGCTGATGCGGGGATTCCTGTTTTTGGGCAGAAGGGTTGCTCTATTCATGTGCAGGAGGT
GATCCGGGCTTTAAAAGGACAAGGTGGACAAGTTACACTGTTTGCTACTCGGATTGGGGGAGAGTTACCGGCGGATTTGG
CTGATGTGGTGGTGCATCAACTTCCACCTGTTCCTAAGTTAGAACGATCGCAGCGAGAGCAGGTTGCTTTGGGAATGAAT
CCTGATTTACGGTTGAGTTTGGAGAAGTTTGGCTCTTTTGATTTGATTTATGAGCGTTATTCTCTTTGGAGTTATGGCGC
GATGGAATATGCCCAAGATAGGGGAATTCCTGGTTTGTTGGAGGTGAATTCGCCTCTGATTATCGAACAGGCACAGCATC
GGGGTTTAATTGATCGTGAAGGCGCGGAAGCGGTGGCGCGTCGGGTGTTTTCCGCCGCTACAGGATTGATTGCTGTTTCC
GATGCGGTGAAAAGTTACTTGCTGGATTATGTGGATGGTAGCAAGGTTCATGTGATTCCTAATGGTGTGAATCCTCACCG
CTTTTCTCATCGGCGTTCTGCAAGTCAATCAGATAGTTTTACGGTGGGTTTTGTCGGTACTCTGAAACCTTGGCATGGAT
TGCCCATCCTGACGGAAGCTTTTAGTTTACTGCATCAACGTGTTCCCCATGCCAAACTTTTGATCGTTGGTGATGGCCCT
GAACGGGAAAATCTGGAAGCTGAATTAGCTGCACGGGGACTAGATGCTCATACTCAATTCACTGGTGCGGTGAATCCTGA
TGAAATTCCTCAGTTATTAGCTGCAATGGATGTGGCTGTTGCACCCTACGCCGCACAATCTGATTTTTACTTCTCGCCGT
TGAAGGTGTATGAATATATGGCGGCTGGTTTACCTGTAGTTGTTAGTCAGATTGGACAATTGGCAGACTTAATTGATCCG
GGGGTGAATGGTATGCTTTGCCCTCCTGGTGATGCGATCGCCTTAGCTGACACATTAGAACAATTATGGCGATCGCCTAA
TCTGCGTCACAGTTTAGGACAAGCGGCGCGAGAAACCGTGATAGCTCATCATACTTGGGATGCGATCGCAGGGCAAATTC
TGCATCTAGCGTCTCCATTACCAGTGGAGGTGAAACTATAA

Upstream 100 bases:

>100_bases
TCCTCAAACCCTTGTGATATCAGGCTGCTTAAATTTTGAATTTTGTTCGCCCTTGGCGTTCCCGTAGGGTATTTTGAATT
GATTTTAGGAGGTGTGAAGG

Downstream 100 bases:

>100_bases
ATGCTAAAACCCAAAAAATCAGCTGTTCCCGGTTTGTGGGGAGTGCTGGCTTATTTCTGGCCTGATATTCGTCCCCAGTA
TGGATTACTTTTAGTTTCGG

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MRVAYICADAGIPVFGQKGCSIHVQEVIRALKGQGGQVTLFATRIGGELPADLADVVVHQLPPVPKLERSQREQVALGMN
PDLRLSLEKFGSFDLIYERYSLWSYGAMEYAQDRGIPGLLEVNSPLIIEQAQHRGLIDREGAEAVARRVFSAATGLIAVS
DAVKSYLLDYVDGSKVHVIPNGVNPHRFSHRRSASQSDSFTVGFVGTLKPWHGLPILTEAFSLLHQRVPHAKLLIVGDGP
ERENLEAELAARGLDAHTQFTGAVNPDEIPQLLAAMDVAVAPYAAQSDFYFSPLKVYEYMAAGLPVVVSQIGQLADLIDP
GVNGMLCPPGDAIALADTLEQLWRSPNLRHSLGQAARETVIAHHTWDAIAGQILHLASPLPVEVKL

Sequences:

>Translated_386_residues
MRVAYICADAGIPVFGQKGCSIHVQEVIRALKGQGGQVTLFATRIGGELPADLADVVVHQLPPVPKLERSQREQVALGMN
PDLRLSLEKFGSFDLIYERYSLWSYGAMEYAQDRGIPGLLEVNSPLIIEQAQHRGLIDREGAEAVARRVFSAATGLIAVS
DAVKSYLLDYVDGSKVHVIPNGVNPHRFSHRRSASQSDSFTVGFVGTLKPWHGLPILTEAFSLLHQRVPHAKLLIVGDGP
ERENLEAELAARGLDAHTQFTGAVNPDEIPQLLAAMDVAVAPYAAQSDFYFSPLKVYEYMAAGLPVVVSQIGQLADLIDP
GVNGMLCPPGDAIALADTLEQLWRSPNLRHSLGQAARETVIAHHTWDAIAGQILHLASPLPVEVKL
>Mature_386_residues
MRVAYICADAGIPVFGQKGCSIHVQEVIRALKGQGGQVTLFATRIGGELPADLADVVVHQLPPVPKLERSQREQVALGMN
PDLRLSLEKFGSFDLIYERYSLWSYGAMEYAQDRGIPGLLEVNSPLIIEQAQHRGLIDREGAEAVARRVFSAATGLIAVS
DAVKSYLLDYVDGSKVHVIPNGVNPHRFSHRRSASQSDSFTVGFVGTLKPWHGLPILTEAFSLLHQRVPHAKLLIVGDGP
ERENLEAELAARGLDAHTQFTGAVNPDEIPQLLAAMDVAVAPYAAQSDFYFSPLKVYEYMAAGLPVVVSQIGQLADLIDP
GVNGMLCPPGDAIALADTLEQLWRSPNLRHSLGQAARETVIAHHTWDAIAGQILHLASPLPVEVKL

Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR013534 [H]

Pfam domain/function: PF08323 Glyco_transf_5; PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 41841; Mature: 41841

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAYICADAGIPVFGQKGCSIHVQEVIRALKGQGGQVTLFATRIGGELPADLADVVVHQ
CEEEEEEECCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHH
LPPVPKLERSQREQVALGMNPDLRLSLEKFGSFDLIYERYSLWSYGAMEYAQDRGIPGLL
CCCCCCHHHHCHHHEEECCCCCCEEEHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCEE
EVNSPLIIEQAQHRGLIDREGAEAVARRVFSAATGLIAVSDAVKSYLLDYVDGSKVHVIP
ECCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
NGVNPHRFSHRRSASQSDSFTVGFVGTLKPWHGLPILTEAFSLLHQRVPHAKLLIVGDGP
CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
ERENLEAELAARGLDAHTQFTGAVNPDEIPQLLAAMDVAVAPYAAQSDFYFSPLKVYEYM
CCCCCHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
AAGLPVVVSQIGQLADLIDPGVNGMLCPPGDAIALADTLEQLWRSPNLRHSLGQAARETV
HCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IAHHTWDAIAGQILHLASPLPVEVKL
HHHCCHHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MRVAYICADAGIPVFGQKGCSIHVQEVIRALKGQGGQVTLFATRIGGELPADLADVVVHQ
CEEEEEEECCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHH
LPPVPKLERSQREQVALGMNPDLRLSLEKFGSFDLIYERYSLWSYGAMEYAQDRGIPGLL
CCCCCCHHHHCHHHEEECCCCCCEEEHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCEE
EVNSPLIIEQAQHRGLIDREGAEAVARRVFSAATGLIAVSDAVKSYLLDYVDGSKVHVIP
ECCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
NGVNPHRFSHRRSASQSDSFTVGFVGTLKPWHGLPILTEAFSLLHQRVPHAKLLIVGDGP
CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
ERENLEAELAARGLDAHTQFTGAVNPDEIPQLLAAMDVAVAPYAAQSDFYFSPLKVYEYM
CCCCCHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
AAGLPVVVSQIGQLADLIDPGVNGMLCPPGDAIALADTLEQLWRSPNLRHSLGQAARETV
HCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IAHHTWDAIAGQILHLASPLPVEVKL
HHHCCHHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]