Click here to switch to the map view.

The map label for this gene is 17232623

Identifier: 17232623

GI number: 17232623

Start: 6127802

End: 6129010

Strand: Reverse

Name: 17232623

Synonym: all5131

Alternate gene names: NA

Gene position: 6129010-6127802 (Counterclockwise)

Preceding gene: 17232624

Following gene: 17232622

Centisome position: 95.56

GC content: 45.24

Gene sequence:

>1209_bases
ATGGCTACTAACATCCTCGACAATATCAACCTGGGGACACTGGGAGAACTCCTTCAACAAGCACGTAAGAAGTGTAGTAT
GACGCAGGCTGATGCAGCTAAGGTGATTGATGCTGCACGTACCACGATGATTGCGATCGAAAAAGGAGAACGCCGCATTA
AACCCAATGAACTGATCAAACTGGCTCGTGCTTACGGATGTTCTGTTAGTGACTTTGTGCGTCCGCGTCCGGTGGTACAA
CCTTTTGAGGTACAGTTTAGGGCAGTTTATCAGCGCAGTGAGGAAGAAGAGGCAGAAATTAAACCATTTATCCTCAAATT
AGAGGAACTTTGCCAGAATTATCTGGAACTTGAGCAGATTATGGACGCGCCACTGCCGCAAAACTATCCTCTGGAGTATC
AGGTAAAAAATATGCCGATTAAATCGGCTGCGGAGAGTCTAGCAATTGCAGAGCGTCAAAGGCTGGGTTTGGGGGATGCT
CCTATTCCTAAACTTCGAGACATCCTTGAACAAGATGTGGGTTTACGTATCTTCTATTTGCAGATGCCACAAAAATACTC
AGAAGTGTACAGCTATAACGAGCAAATAGGTGGATGTATGGCTATCAATGCTCATCATCCAGAGGAGCGAAGACGTTGGT
CAATGGCGCACGGATACCTGCATTTTTTGGCACATCGGCGAAAACCAGAGTTCCATTTTGATAATCAGTATCAAAGAATG
CCAGAAAGTGAGCAATTAGCGGAAACTTTCCCCAAATATTTTCTGATGCCTACCAGTGGATTGCTTAAGCGGTTCAATGA
TATGTACCGTACTCATGGCAAATTCACTCCCACTAATCTATTTACACTAGCCCATTATTACGGTGTTTCTGTAGAAGCAC
TTGTTTATCGACTTGAGGAAATAGAACTTCTGCCTACTGGAACTTGGGAAAAATTGCGAGATAGGGGATTAAAAGTTAGG
AAAGTGCAGCAGGAACTTGGTTTGGAAGACATACCCCAAAGGGTTGATATGATGCCTCTCCACTATCAACACTTGGCAAT
TGAGGCGCTAGATCAGGGTTTGATTACTGAAGGGCGTTTTGCTGATTTCCTCTGTGTTGACCGCTTGGAAGCACGACGCA
TCGCCGAAGCGTTACGGGAATATTCAAGTGGAATGATGGAAGAAGCTCCTGATTTCGACCTGCGTCAGATCCAGGCTGGT
GGGAAGTGA

Upstream 100 bases:

>100_bases
TAATTATAAAAAATACTTAATACCTGACATTGTTAGAATAGTTCTATAACAGTCTCATGCAATCAACCTCTCCTGCTCAA
CAAGGTTGAGGAAAAATATT

Downstream 100 bases:

>100_bases
GAACAATTTATGCAAATTAATCATTCCCACCTGATTCTTGATGCTTGTTGTGTTCTCAACTTTTGTGCTTCGGGTGATTT
TCTGGGCATCTTGAAATCTA

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Conserved Domain Protein; Adenine Deaminase

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MATNILDNINLGTLGELLQQARKKCSMTQADAAKVIDAARTTMIAIEKGERRIKPNELIKLARAYGCSVSDFVRPRPVVQ
PFEVQFRAVYQRSEEEEAEIKPFILKLEELCQNYLELEQIMDAPLPQNYPLEYQVKNMPIKSAAESLAIAERQRLGLGDA
PIPKLRDILEQDVGLRIFYLQMPQKYSEVYSYNEQIGGCMAINAHHPEERRRWSMAHGYLHFLAHRRKPEFHFDNQYQRM
PESEQLAETFPKYFLMPTSGLLKRFNDMYRTHGKFTPTNLFTLAHYYGVSVEALVYRLEEIELLPTGTWEKLRDRGLKVR
KVQQELGLEDIPQRVDMMPLHYQHLAIEALDQGLITEGRFADFLCVDRLEARRIAEALREYSSGMMEEAPDFDLRQIQAG
GK

Sequences:

>Translated_402_residues
MATNILDNINLGTLGELLQQARKKCSMTQADAAKVIDAARTTMIAIEKGERRIKPNELIKLARAYGCSVSDFVRPRPVVQ
PFEVQFRAVYQRSEEEEAEIKPFILKLEELCQNYLELEQIMDAPLPQNYPLEYQVKNMPIKSAAESLAIAERQRLGLGDA
PIPKLRDILEQDVGLRIFYLQMPQKYSEVYSYNEQIGGCMAINAHHPEERRRWSMAHGYLHFLAHRRKPEFHFDNQYQRM
PESEQLAETFPKYFLMPTSGLLKRFNDMYRTHGKFTPTNLFTLAHYYGVSVEALVYRLEEIELLPTGTWEKLRDRGLKVR
KVQQELGLEDIPQRVDMMPLHYQHLAIEALDQGLITEGRFADFLCVDRLEARRIAEALREYSSGMMEEAPDFDLRQIQAG
GK
>Mature_401_residues
ATNILDNINLGTLGELLQQARKKCSMTQADAAKVIDAARTTMIAIEKGERRIKPNELIKLARAYGCSVSDFVRPRPVVQP
FEVQFRAVYQRSEEEEAEIKPFILKLEELCQNYLELEQIMDAPLPQNYPLEYQVKNMPIKSAAESLAIAERQRLGLGDAP
IPKLRDILEQDVGLRIFYLQMPQKYSEVYSYNEQIGGCMAINAHHPEERRRWSMAHGYLHFLAHRRKPEFHFDNQYQRMP
ESEQLAETFPKYFLMPTSGLLKRFNDMYRTHGKFTPTNLFTLAHYYGVSVEALVYRLEEIELLPTGTWEKLRDRGLKVRK
VQQELGLEDIPQRVDMMPLHYQHLAIEALDQGLITEGRFADFLCVDRLEARRIAEALREYSSGMMEEAPDFDLRQIQAGG
K

Specific function: Unknown

COG id: COG2856

COG function: function code E; Predicted Zn peptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46603; Mature: 46472

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNILDNINLGTLGELLQQARKKCSMTQADAAKVIDAARTTMIAIEKGERRIKPNELIK
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHH
LARAYGCSVSDFVRPRPVVQPFEVQFRAVYQRSEEEEAEIKPFILKLEELCQNYLELEQI
HHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MDAPLPQNYPLEYQVKNMPIKSAAESLAIAERQRLGLGDAPIPKLRDILEQDVGLRIFYL
HCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEE
QMPQKYSEVYSYNEQIGGCMAINAHHPEERRRWSMAHGYLHFLAHRRKPEFHFDNQYQRM
ECCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
PESEQLAETFPKYFLMPTSGLLKRFNDMYRTHGKFTPTNLFTLAHYYGVSVEALVYRLEE
CCHHHHHHHCHHHEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
IELLPTGTWEKLRDRGLKVRKVQQELGLEDIPQRVDMMPLHYQHLAIEALDQGLITEGRF
HHCCCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
ADFLCVDRLEARRIAEALREYSSGMMEEAPDFDLRQIQAGGK
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCC
>Mature Secondary Structure 
ATNILDNINLGTLGELLQQARKKCSMTQADAAKVIDAARTTMIAIEKGERRIKPNELIK
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHH
LARAYGCSVSDFVRPRPVVQPFEVQFRAVYQRSEEEEAEIKPFILKLEELCQNYLELEQI
HHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MDAPLPQNYPLEYQVKNMPIKSAAESLAIAERQRLGLGDAPIPKLRDILEQDVGLRIFYL
HCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEE
QMPQKYSEVYSYNEQIGGCMAINAHHPEERRRWSMAHGYLHFLAHRRKPEFHFDNQYQRM
ECCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
PESEQLAETFPKYFLMPTSGLLKRFNDMYRTHGKFTPTNLFTLAHYYGVSVEALVYRLEE
CCHHHHHHHCHHHEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
IELLPTGTWEKLRDRGLKVRKVQQELGLEDIPQRVDMMPLHYQHLAIEALDQGLITEGRF
HHCCCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
ADFLCVDRLEARRIAEALREYSSGMMEEAPDFDLRQIQAGGK
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA