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The map label for this gene is yciR [C]

Identifier: 17232389

GI number: 17232389

Start: 5838199

End: 5840664

Strand: Reverse

Name: yciR [C]

Synonym: all4897

Alternate gene names: 17232389

Gene position: 5840664-5838199 (Counterclockwise)

Preceding gene: 17232392

Following gene: 17232388

Centisome position: 91.06

GC content: 38.85

Gene sequence:

>2466_bases
ATGAACTGGTCTATTTACAAAAAAAATACCAATATTTTTGTAGTAGCAGTAATAATCATGTTTATTATTGGTGTTGCCTC
TTATCTCAGCCTACTGGAGTACAGAAAAAACGCTCAGTCAGTAATACACACCCGTGAAGTACTCGAAAAAACTCAAGAAT
TAATAGCCCACGTAAGTGATGCCGAAACTGGACAACGAGGTTATCTCCTCACGGGTAAACCCGCATATCTAGAGCCTTAT
CATAGGGCAACTGATGAGATTGGTCAAAAAGTAAAACTTTTAAGCCAATTGACTGTAGATAACCCCAGCCAACAAGAACG
AATAACTACCCTTAAGCCTTTAATTAGTAGAAAATTAACTCTGCTGGAACAGACAATTAAATTAAGGAATGATGAGAAGT
TAGAAGCTGCTTTAAAAATAGTTCAAACGGATGAAGGACAGCAGCTGATGGATAAAATTCGGCTGGTTATTAAAGCTATA
GAAAATGAAGAAAATAATTTATTGCAACAGCGTTCAATACAAACAAGCGACAGTGCTTATCGCACTACCTGGCTGACTAT
TTCCTGTAGCATAGTAGCTGCTAGTTTAGTTAGTTCAGCAAATATTATTATTAATCAAGAACTTACTAAACGCCGACGCA
TAGAAAAATCCCTCCAACAAGCTCATGATCAATTAGAAAATAAAGTTAAAGAGCGCACCTCTGAAATTATCAAAACCCAC
GATAAACTAAAATCTGAAATCCATGAACATAAACAGACTTTAGAGACATTAGCCCATAGTCAAAAACAATTCAAAGCTGT
AGTAGAGAACACACCGGATATCATTGTCAGGTTTAATCCTCAATTGTGTTATGTTTACGTCAATCCCGCTATTGAGAAAG
TTACAGGGATATTAGCCCAAAAATTCATCGGTAAGACTAACGTAGAGTTGAATCTACCACAAGAAATTTGTCGAATATGG
GATTATAAACTCCAGCGAGTTTTCAAAACTGGGCAACAGACTGAGTTTGAAAGCAATTTACCTACATCCTGGGGGACAAA
ATATTACCATACTCGTCTTGTTCCTGAGTTAGCTAAAGATAGTTCAGTAGAATTTGTTTTAAGTATCGCTCGTGACATTA
CTGCTCTCAAGCAAGCAGAAGCGAAATTAATTCATGATGCTTTTCATGATTCACTAACTGGACTGCCAAATCGTGCCTTA
TTTGTGGAAAGGTTGGAGCGATCGCTAGCAGTAGTAAAACGTCATCCAGACTACAGATTTGCTGTTCTATTCCTCGATGT
GGATCGTTTTAAAGTTGTCAACGATAGTCTTGGTCACATGATTGGCGATCAATTGTTAAATGCGCTGGCACGCAGGTTAG
AAATGTGCCTGCGTGCTGGAGATACAGTTGCCCGTATAGGAGGAGATGAGTTCACGATCTTATTAGATGATCTCAAAGAC
TTAAATGATGTAACAAATGTAGTTAACAGAATAAATATGTCTTTGACAGGAGCCTTCAACCTCAGTGGACACGAAGTATT
TAGTACTATCAGCATTGGTATCACTTTAAGCACAAATACTTATAATCTAGCTGAGGAGCTTATCCGTGATGCCGACATTG
CAATGTACCGTGCTAAAGCATTAGGAAAAGCCCGCCATGAAATCTTTGATTTTAGTATGTACAGCCAAGCTGCCCAGCTA
CTACAGTTAGAAATGGATTTACGACGGGCAGTTGAACGCCAAGAGTTTCAGGTTCATTATCAACCAATTGTTTCCCTAGA
AACCTACAAAATTATCGGTTTCGAGGCTCTTGTACGCTGGCAACATCCTCAACATGGGCTTGTTTCTCCAGAAAGGTTTA
TTTCATTAGCAGAAGAAACTGGGCTGATTGTGCCGATTGGTTATTGGGTGTTACGCGAAGCTTGTCGTCAAATGCGGGCT
TGGCAATTGGAATTTACTACTCATCCACCCTTAACCATCAGTGTCAATATTTCTAGTAAACAGTTTTCCCAACCCAATTT
GATTGAGGAAATTCGCAAAATTCTGCAAGATACGGGTTTAGAAGCCAGTAGTCTCAAGTTGGAGATTACGGAAACCGTAC
TAATGGAGAACCATGAATCAGCCACTGCTATGCTTTTGCAATTGCAGCAGATGAATATTCAGTTACACCTAGATGATTTT
GGCATAGGTTATTCATCTTTGAGTTACCTGCACCGGTTTCCCTCTAGTGCATTGAAGATTGATCGTTCATTTGTCATCAA
CCTTGGTGCTGATGAAAAAAACTTAGAAATTGTTCAGGCGATTATTTCCTTAGCACTTAGTCTAAATATAGATGTCATAG
CAGAGGGTGTAGAAACAATGGAGCAATTAAGACAGTTGCAAATAAAAAAATGCAAACACGCACAAGGATACATTTTCTCC
CAGCCACTGGATAGCCAGTCGGTAGATACATTAATCGCATCAAGCTTGCCCTTTAAGCTCAATTAA

Upstream 100 bases:

>100_bases
AAAAATTCTTGAAAAGAAAATATTGAATTAACTGCGACATCTTATCATATATTTTTATTTGATTTTATTAAATAATTACT
TTTTAAAATAGGCACGAAAA

Downstream 100 bases:

>100_bases
TCCCTGTTAGCTTCGTCTGATTTGATAAAATCTCTCTAGATATAGTTATCGAAACAATCGGGTCTAAAACCTCGCATTTT
AAGGCGAAAAGTTTTTGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 821; Mature: 821

Protein sequence:

>821_residues
MNWSIYKKNTNIFVVAVIIMFIIGVASYLSLLEYRKNAQSVIHTREVLEKTQELIAHVSDAETGQRGYLLTGKPAYLEPY
HRATDEIGQKVKLLSQLTVDNPSQQERITTLKPLISRKLTLLEQTIKLRNDEKLEAALKIVQTDEGQQLMDKIRLVIKAI
ENEENNLLQQRSIQTSDSAYRTTWLTISCSIVAASLVSSANIIINQELTKRRRIEKSLQQAHDQLENKVKERTSEIIKTH
DKLKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQKFIGKTNVELNLPQEICRIW
DYKLQRVFKTGQQTEFESNLPTSWGTKYYHTRLVPELAKDSSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRAL
FVERLERSLAVVKRHPDYRFAVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLKD
LNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAKALGKARHEIFDFSMYSQAAQL
LQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVRWQHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRA
WQLEFTTHPPLTISVNISSKQFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDDF
GIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVETMEQLRQLQIKKCKHAQGYIFS
QPLDSQSVDTLIASSLPFKLN

Sequences:

>Translated_821_residues
MNWSIYKKNTNIFVVAVIIMFIIGVASYLSLLEYRKNAQSVIHTREVLEKTQELIAHVSDAETGQRGYLLTGKPAYLEPY
HRATDEIGQKVKLLSQLTVDNPSQQERITTLKPLISRKLTLLEQTIKLRNDEKLEAALKIVQTDEGQQLMDKIRLVIKAI
ENEENNLLQQRSIQTSDSAYRTTWLTISCSIVAASLVSSANIIINQELTKRRRIEKSLQQAHDQLENKVKERTSEIIKTH
DKLKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQKFIGKTNVELNLPQEICRIW
DYKLQRVFKTGQQTEFESNLPTSWGTKYYHTRLVPELAKDSSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRAL
FVERLERSLAVVKRHPDYRFAVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLKD
LNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAKALGKARHEIFDFSMYSQAAQL
LQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVRWQHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRA
WQLEFTTHPPLTISVNISSKQFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDDF
GIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVETMEQLRQLQIKKCKHAQGYIFS
QPLDSQSVDTLIASSLPFKLN
>Mature_821_residues
MNWSIYKKNTNIFVVAVIIMFIIGVASYLSLLEYRKNAQSVIHTREVLEKTQELIAHVSDAETGQRGYLLTGKPAYLEPY
HRATDEIGQKVKLLSQLTVDNPSQQERITTLKPLISRKLTLLEQTIKLRNDEKLEAALKIVQTDEGQQLMDKIRLVIKAI
ENEENNLLQQRSIQTSDSAYRTTWLTISCSIVAASLVSSANIIINQELTKRRRIEKSLQQAHDQLENKVKERTSEIIKTH
DKLKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQKFIGKTNVELNLPQEICRIW
DYKLQRVFKTGQQTEFESNLPTSWGTKYYHTRLVPELAKDSSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRAL
FVERLERSLAVVKRHPDYRFAVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLKD
LNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAKALGKARHEIFDFSMYSQAAQL
LQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVRWQHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRA
WQLEFTTHPPLTISVNISSKQFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDDF
GIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVETMEQLRQLQIKKCKHAQGYIFS
QPLDSQSVDTLIASSLPFKLN

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=562, Percent_Identity=33.0960854092527, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=33.8709677419355, Blast_Score=230, Evalue=3e-61,
Organism=Escherichia coli, GI226510982, Length=421, Percent_Identity=29.9287410926366, Blast_Score=179, Evalue=5e-46,
Organism=Escherichia coli, GI1787055, Length=276, Percent_Identity=31.8840579710145, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=36.7088607594937, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=35, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=31.5985130111524, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=33.4677419354839, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1786507, Length=299, Percent_Identity=31.438127090301, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=35, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1788381, Length=338, Percent_Identity=27.5147928994083, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=39.7849462365591, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI1788849, Length=438, Percent_Identity=25.7990867579909, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=34.3195266272189, Blast_Score=100, Evalue=7e-22,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=37.4269005847953, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=31.638418079096, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=32.5966850828729, Blast_Score=83, Evalue=9e-17,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=26.5560165975104, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=33.1395348837209, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=32.9192546583851, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=90, Percent_Identity=37.7777777777778, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1787802, Length=292, Percent_Identity=24.6575342465753, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 93555; Mature: 93555

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWSIYKKNTNIFVVAVIIMFIIGVASYLSLLEYRKNAQSVIHTREVLEKTQELIAHVSD
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AETGQRGYLLTGKPAYLEPYHRATDEIGQKVKLLSQLTVDNPSQQERITTLKPLISRKLT
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LLEQTIKLRNDEKLEAALKIVQTDEGQQLMDKIRLVIKAIENEENNLLQQRSIQTSDSAY
HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCE
RTTWLTISCSIVAASLVSSANIIINQELTKRRRIEKSLQQAHDQLENKVKERTSEIIKTH
EEEEEEEEHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKLKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECHHHHHHHHHHHH
KFIGKTNVELNLPQEICRIWDYKLQRVFKTGQQTEFESNLPTSWGTKYYHTRLVPELAKD
HHHCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
SSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRALFVERLERSLAVVKRHPDYRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEE
AVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLKD
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHH
LNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAKA
HHHHHHHHHHHCCEEEEEECCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
LGKARHEIFDFSMYSQAAQLLQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEEEEEEEECHHHHHHC
QHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRAWQLEFTTHPPLTISVNISSK
CCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCEEEEEECCCCEEEEEEECCC
QFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDDF
CCCCCCHHHHHHHHHHHCCCCHHHEEEEEHHHHHHCCCCHHHHHHHHHHHCCEEEEEECC
GIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVETM
CCCHHHHHHHHHCCHHHHEECCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
EQLRQLQIKKCKHAQGYIFSQPLDSQSVDTLIASSLPFKLN
HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNWSIYKKNTNIFVVAVIIMFIIGVASYLSLLEYRKNAQSVIHTREVLEKTQELIAHVSD
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AETGQRGYLLTGKPAYLEPYHRATDEIGQKVKLLSQLTVDNPSQQERITTLKPLISRKLT
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LLEQTIKLRNDEKLEAALKIVQTDEGQQLMDKIRLVIKAIENEENNLLQQRSIQTSDSAY
HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCE
RTTWLTISCSIVAASLVSSANIIINQELTKRRRIEKSLQQAHDQLENKVKERTSEIIKTH
EEEEEEEEHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKLKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECHHHHHHHHHHHH
KFIGKTNVELNLPQEICRIWDYKLQRVFKTGQQTEFESNLPTSWGTKYYHTRLVPELAKD
HHHCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
SSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRALFVERLERSLAVVKRHPDYRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEE
AVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLKD
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHH
LNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAKA
HHHHHHHHHHHCCEEEEEECCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
LGKARHEIFDFSMYSQAAQLLQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEEEEEEEECHHHHHHC
QHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRAWQLEFTTHPPLTISVNISSK
CCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCEEEEEECCCCEEEEEEECCC
QFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDDF
CCCCCCHHHHHHHHHHHCCCCHHHEEEEEHHHHHHCCCCHHHHHHHHHHHCCEEEEEECC
GIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVETM
CCCHHHHHHHHHCCHHHHEECCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
EQLRQLQIKKCKHAQGYIFSQPLDSQSVDTLIASSLPFKLN
HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]