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The map label for this gene is tadA [H]

Identifier: 17232364

GI number: 17232364

Start: 5803604

End: 5804047

Strand: Reverse

Name: tadA [H]

Synonym: all4872

Alternate gene names: 17232364

Gene position: 5804047-5803604 (Counterclockwise)

Preceding gene: 17232365

Following gene: 17232363

Centisome position: 90.49

GC content: 48.42

Gene sequence:

>444_bases
ATGAGTCATGCCCTAGAACTAGCAAAGGTGGCAGGAGAGGCGGGTGAGATTCCCGTTGGCGCGGTAATTACTGATGCTAG
TGGTCATTTGATAGCGGAAGGAGAAAATCGCAAGGAGCGAGACCAAGACCCAACAGCTCATGCGGAGATTGTGGCATTGA
GGGCGGCTACTAAAATTTTACAAACTTGGCGACTCCATGAATGCACTTTGTACGTTACCCTAGAGCCTTGCCCAATGTGT
GCTGGCGCTATCATACACTCGCGGTTAGGAAAGCTTGTCTATGGGGTGGACGATACCAAAACTGGCGCGATTCGGACTGT
TTTAAATATTCCTGACAGTGCGGCTTCTAATCACCGCTTACAAGTTATCGGAGGTATTCTAGAATCAGCCTGTCGCCAGC
ATTTGCAAAACTGGTTTGTGAATCGACGGTTGCAAAACAAGTAA

Upstream 100 bases:

>100_bases
TGAGGATACAATTATTTAATTTTGTATTTAATTTTGAATTTTGAATTTTGAATTGCCCACAGGAGTTGACTACCCCGAAT
ATCTCATATACCGCCAATGG

Downstream 100 bases:

>100_bases
CGGACAGACGTAAAACTGTCCAGCTGCTATGACACAAGTCACGGAAGAAAATCTACGGTGGAACTACGTCAATATCACAC
CCTACTTTTACCGGACAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSHALELAKVAGEAGEIPVGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATKILQTWRLHECTLYVTLEPCPMC
AGAIIHSRLGKLVYGVDDTKTGAIRTVLNIPDSAASNHRLQVIGGILESACRQHLQNWFVNRRLQNK

Sequences:

>Translated_147_residues
MSHALELAKVAGEAGEIPVGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATKILQTWRLHECTLYVTLEPCPMC
AGAIIHSRLGKLVYGVDDTKTGAIRTVLNIPDSAASNHRLQVIGGILESACRQHLQNWFVNRRLQNK
>Mature_146_residues
SHALELAKVAGEAGEIPVGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATKILQTWRLHECTLYVTLEPCPMCA
GAIIHSRLGKLVYGVDDTKTGAIRTVLNIPDSAASNHRLQVIGGILESACRQHLQNWFVNRRLQNK

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=150, Percent_Identity=29.3333333333333, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI145693172, Length=147, Percent_Identity=48.2993197278912, Blast_Score=137, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17541138, Length=152, Percent_Identity=32.2368421052632, Blast_Score=80, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17554608, Length=96, Percent_Identity=42.7083333333333, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17555996, Length=84, Percent_Identity=40.4761904761905, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355527, Length=145, Percent_Identity=29.6551724137931, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 16024; Mature: 15892

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHALELAKVAGEAGEIPVGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATKIL
CCHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
QTWRLHECTLYVTLEPCPMCAGAIIHSRLGKLVYGVDDTKTGAIRTVLNIPDSAASNHRL
HHHCCCEEEEEEEECCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCHH
QVIGGILESACRQHLQNWFVNRRLQNK
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SHALELAKVAGEAGEIPVGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATKIL
CHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
QTWRLHECTLYVTLEPCPMCAGAIIHSRLGKLVYGVDDTKTGAIRTVLNIPDSAASNHRL
HHHCCCEEEEEEEECCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCHH
QVIGGILESACRQHLQNWFVNRRLQNK
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]