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The map label for this gene is petM

Identifier: 17232246

GI number: 17232246

Start: 5666599

End: 5666703

Strand: Reverse

Name: petM

Synonym: asl4754

Alternate gene names: 17232246

Gene position: 5666703-5666599 (Counterclockwise)

Preceding gene: 17232248

Following gene: 17232245

Centisome position: 88.35

GC content: 40.95

Gene sequence:

>105_bases
ATGAGCGGCGAACTACTGAATGCAGCTTTGTTATCTTTCGGCTTAATCTTCGTAGGTTGGGCTTTGGGTGCTTTATTATT
GAAAATTCAAGGCGCAGAAGAATAA

Upstream 100 bases:

>100_bases
CAACACTAAATTACTCGGCTCACATTACTTAGCACTTCTGACTCCTGTGCCTAGATAAGACCAAAAAATCAAAATTTATT
CGTCAAGGAGAATCACATTA

Downstream 100 bases:

>100_bases
TTTATCTGTATTTGCCTGCTTTCAACAGATGAGAAGCCTGAATATCACTGGCAAAATAGCTTGTCCAGGTACTCCTTTGA
AGAAGCAGACTACCGCAGTC

Product: cytochrome b6-f complex subunit PetM

Products: NA

Alternate protein names: Cytochrome b6-f complex subunit VII; Cytochrome b6-f complex subunit petM

Number of amino acids: Translated: 34; Mature: 33

Protein sequence:

>34_residues
MSGELLNAALLSFGLIFVGWALGALLLKIQGAEE

Sequences:

>Translated_34_residues
MSGELLNAALLSFGLIFVGWALGALLLKIQGAEE
>Mature_33_residues
SGELLNAALLSFGLIFVGWALGALLLKIQGAEE

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the petM family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PETM_ANAVT (P0A3Y2)

Other databases:

- EMBL:   AJ299220
- EMBL:   CP000117
- RefSeq:   YP_322436.1
- ProteinModelPortal:   P0A3Y2
- SMR:   P0A3Y2
- STRING:   P0A3Y2
- GeneID:   3681696
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_1919
- eggNOG:   NOG116843
- HOGENOM:   HBG581475
- ProtClustDB:   PRK11876
- BioCyc:   AVAR240292:AVA_1919-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_00396
- InterPro:   IPR012595

Pfam domain/function: PF08041 PetM

EC number: NA

Molecular weight: Translated: 3546; Mature: 3415

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14e8dbb4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGELLNAALLSFGLIFVGWALGALLLKIQGAEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure 
SGELLNAALLSFGLIFVGWALGALLLKIQGAEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA