Click here to switch to the map view.

The map label for this gene is rfbC [H]

Identifier: 17231980

GI number: 17231980

Start: 5373931

End: 5376075

Strand: Direct

Name: rfbC [H]

Synonym: alr4488

Alternate gene names: 17231980

Gene position: 5373931-5376075 (Clockwise)

Preceding gene: 17231979

Following gene: 17231981

Centisome position: 83.79

GC content: 35.9

Gene sequence:

>2145_bases
ATGGTAAAAAAAATTAAATTACCCAAATTTCTCAAAGACATAATTAAGGAAAACATCATCGTAGATAGATACATAAGAGA
TGCTACCGCACTTGCGGGTATCATGGATTTCTCTTGTGCAGATATTTCTGAAATACAGCAGCATCCTGAGCGAGTCAATC
AATCAGGCAGTCAAACTATCAATTGGTATGTACCACCATTTGAAAACGCTTTTTATGGTGGTGTTATGACCATACTCCGC
ACTGCTGATTATTTACATCAGCATGGAAAAATCAAACAAAGATTTCTGATTTGTGGAGATAGTAATGCTGAAGTGATGCT
TACTAAGATTACTAATGCTTTTCCTAATTTGAATACTGCTGAAGTAATCATTCTCAACTCCATGGAGGCTATTCAGAACA
TTCCACCATCAGACTTCTCAATAGCTACCCTTTGGACAACAGCTTATGTCCTATTAAAAGTAAACAATACTGGCTTAAAA
TTTTATTTTATACAAGATTTTGAACCCCTGTTTTATCCTGCTGGCTCAACTTACGCTCAAGCTGAGGCAACTTACCGTTT
TGGGTTCTATGGAATTGCTAACACTATCAGTTTAAGAAAAATATATGAAACTGAATATGCTGGCATAGCGACTCATTTTA
CACCATGTGTAGATACAAAGGTCTTTTATCCTGACAGTAGCATCAGGAAAAATGATACTTCCAAGCGCGTATTTTTTTAT
GGAAGACCAGGACATCCACGTAATGGATTTGAGTTAGCAGTTGAAGCAATGCGTAAGCTGAAAACCCGTTATGGTTCTCA
GATAGAAATATTATCTGCTGGTGCTAATTGGAATCCTAAAGAATATGGTTTAGAAGGAGTTATAGAAAACCTGGGACTAT
TAAGTTATGAAGAAACAGGAAATTTGTATCGTTCTTGCCATATTGGACTTTCAATGATGATGACCAAACACCCATCTTAT
TTACCTTTTGAGATGATGGCTTGTGGTGTATTGGTGGTATCGAATATTAATTCGAGTACACAATGGTTATTGAAAGACAG
GGAAAATTGTCTATTATCCCACCCTAGTGCTAGTTGTATCGCTGAAACAATATCAGAAGCTATTGATAAGTATGATGATT
TTGATTTAATCAGAAACAATGCAGTTAATTGCATTAAATATAACCATGCTGATTGGTCTGTTGAGATTAAGAAAATCACC
GATTTTATTCAATATCATGCAATCAAATACAGTAACTGTTTAGTGCAGTCTAATGGAGATATTTTTGGTTCTGCTGTTTT
TGTTGTAAACAATGGGTATCGTCATTATGTGCCAGATTTAGACTGGATAATCCAACATGGATTCATTTGGCCAACCGATG
TTCAAGTTGTTAGTGATGAAGTGTTACTTAGTCTGCTGCCAGGTCGTCCTGCTCCGCACAAATGGACATTGGAAAATTGG
GTAAACCCACCTAGAGATGTCAGCATGACGATAATAAGAGAAATTGCTGTGTCTAGACTGAGTGGGAATGGCGTAGAATT
TGGCGCGGCGGCATCTCCTTTCCCGATACCGTTACATTGTGATGTCAAATACGCTGATATTTGTCCTACAAATGAACTGC
AAAAAAAACTGTATCCTGGACAAGTAGTTTATAGCTTGATTGAACCCGATGTTATTACTGATTTCAACACTTTGGAAGGG
ATTGAAGACGATAGTCTTGACTTCATAGTTGCTTGTCATGTGATTGAACATACTAGAAATCCTATTGCTGCTATAGAGGC
ATCTTATAAAAAACTACGTATGGGAGGGTCTCTTGTTTTAGTAATACCGGATAAAGATAGAACTTTTGATAAGCAGCGTG
ACTTAACTACCTTAGAACATCTAATTCTAGATTATGAATCTCCCTTGAGAGAAAGAGATAAGGAACACTATTTTGAATTC
TTTAAACTTGCATTTCCCGTCTTAGAAGAAAATTTTATTTCCACAGTAGAAAAAAATTTCCAGGAACAAGCGGATATTCA
CTATCATACATTTACTTATGAAAGTTTTAGTGTACTAATAAGTCATGTATGTAAAAATATTTCCCCTTGGTCGTCAGTAT
GGTCACAACCTACGTTATCTAACCCAATAGAAGATATAGAATTTTACTTTGTATTAACTAAATAA

Upstream 100 bases:

>100_bases
CCAAAAAATGATATTCCAGAATTTGACGATTCTCTAGGAAATGATCCTTATTTTCATCCTGCCTTTAGTTCAGTTGTTCC
TTTAAAATTAAGAGTTAAAA

Downstream 100 bases:

>100_bases
TGAGACACTTAATTAAGTGAGATACCTGAAGCTAGCTAATGAACTTCATTCATACAAAAATTCCTGCTATTTCCCTCCTC
GAACCGCAAGTCTTCAGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 714; Mature: 714

Protein sequence:

>714_residues
MVKKIKLPKFLKDIIKENIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTINWYVPPFENAFYGGVMTILR
TADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNTAEVIILNSMEAIQNIPPSDFSIATLWTTAYVLLKVNNTGLK
FYFIQDFEPLFYPAGSTYAQAEATYRFGFYGIANTISLRKIYETEYAGIATHFTPCVDTKVFYPDSSIRKNDTSKRVFFY
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGANWNPKEYGLEGVIENLGLLSYEETGNLYRSCHIGLSMMMTKHPSY
LPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCIAETISEAIDKYDDFDLIRNNAVNCIKYNHADWSVEIKKIT
DFIQYHAIKYSNCLVQSNGDIFGSAVFVVNNGYRHYVPDLDWIIQHGFIWPTDVQVVSDEVLLSLLPGRPAPHKWTLENW
VNPPRDVSMTIIREIAVSRLSGNGVEFGAAASPFPIPLHCDVKYADICPTNELQKKLYPGQVVYSLIEPDVITDFNTLEG
IEDDSLDFIVACHVIEHTRNPIAAIEASYKKLRMGGSLVLVIPDKDRTFDKQRDLTTLEHLILDYESPLRERDKEHYFEF
FKLAFPVLEENFISTVEKNFQEQADIHYHTFTYESFSVLISHVCKNISPWSSVWSQPTLSNPIEDIEFYFVLTK

Sequences:

>Translated_714_residues
MVKKIKLPKFLKDIIKENIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTINWYVPPFENAFYGGVMTILR
TADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNTAEVIILNSMEAIQNIPPSDFSIATLWTTAYVLLKVNNTGLK
FYFIQDFEPLFYPAGSTYAQAEATYRFGFYGIANTISLRKIYETEYAGIATHFTPCVDTKVFYPDSSIRKNDTSKRVFFY
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGANWNPKEYGLEGVIENLGLLSYEETGNLYRSCHIGLSMMMTKHPSY
LPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCIAETISEAIDKYDDFDLIRNNAVNCIKYNHADWSVEIKKIT
DFIQYHAIKYSNCLVQSNGDIFGSAVFVVNNGYRHYVPDLDWIIQHGFIWPTDVQVVSDEVLLSLLPGRPAPHKWTLENW
VNPPRDVSMTIIREIAVSRLSGNGVEFGAAASPFPIPLHCDVKYADICPTNELQKKLYPGQVVYSLIEPDVITDFNTLEG
IEDDSLDFIVACHVIEHTRNPIAAIEASYKKLRMGGSLVLVIPDKDRTFDKQRDLTTLEHLILDYESPLRERDKEHYFEF
FKLAFPVLEENFISTVEKNFQEQADIHYHTFTYESFSVLISHVCKNISPWSSVWSQPTLSNPIEDIEFYFVLTK
>Mature_714_residues
MVKKIKLPKFLKDIIKENIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTINWYVPPFENAFYGGVMTILR
TADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNTAEVIILNSMEAIQNIPPSDFSIATLWTTAYVLLKVNNTGLK
FYFIQDFEPLFYPAGSTYAQAEATYRFGFYGIANTISLRKIYETEYAGIATHFTPCVDTKVFYPDSSIRKNDTSKRVFFY
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGANWNPKEYGLEGVIENLGLLSYEETGNLYRSCHIGLSMMMTKHPSY
LPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCIAETISEAIDKYDDFDLIRNNAVNCIKYNHADWSVEIKKIT
DFIQYHAIKYSNCLVQSNGDIFGSAVFVVNNGYRHYVPDLDWIIQHGFIWPTDVQVVSDEVLLSLLPGRPAPHKWTLENW
VNPPRDVSMTIIREIAVSRLSGNGVEFGAAASPFPIPLHCDVKYADICPTNELQKKLYPGQVVYSLIEPDVITDFNTLEG
IEDDSLDFIVACHVIEHTRNPIAAIEASYKKLRMGGSLVLVIPDKDRTFDKQRDLTTLEHLILDYESPLRERDKEHYFEF
FKLAFPVLEENFISTVEKNFQEQADIHYHTFTYESFSVLISHVCKNISPWSSVWSQPTLSNPIEDIEFYFVLTK

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 81407; Mature: 81407

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKIKLPKFLKDIIKENIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTI
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
NWYVPPFENAFYGGVMTILRTADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNTA
EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEHHCCCCCCCE
EVIILNSMEAIQNIPPSDFSIATLWTTAYVLLKVNNTGLKFYFIQDFEPLFYPAGSTYAQ
EEEEEECHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCEEEEEEECCCCEEECCCCCEEC
AEATYRFGFYGIANTISLRKIYETEYAGIATHFTPCVDTKVFYPDSSIRKNDTSKRVFFY
CCEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEE
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGANWNPKEYGLEGVIENLGLLSYEETG
ECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEHHCC
NLYRSCHIGLSMMMTKHPSYLPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCI
CHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEECCCCCHHHHHHCCCCCEECCCCHHHH
AETISEAIDKYDDFDLIRNNAVNCIKYNHADWSVEIKKITDFIQYHAIKYSNCLVQSNGD
HHHHHHHHHCCCCHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHEEECCEEEECCCC
IFGSAVFVVNNGYRHYVPDLDWIIQHGFIWPTDVQVVSDEVLLSLLPGRPAPHKWTLENW
EEEEEEEEEECCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHC
VNPPRDVSMTIIREIAVSRLSGNGVEFGAAASPFPIPLHCDVKYADICPTNELQKKLYPG
CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEECCCCCHHHHHHCCCH
QVVYSLIEPDVITDFNTLEGIEDDSLDFIVACHVIEHTRNPIAAIEASYKKLRMGGSLVL
HHHHHHHCCCHHCCCHHHCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHCCCEEEE
VIPDKDRTFDKQRDLTTLEHLILDYESPLRERDKEHYFEFFKLAFPVLEENFISTVEKNF
EECCCCCCCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEQADIHYHTFTYESFSVLISHVCKNISPWSSVWSQPTLSNPIEDIEFYFVLTK
HHHCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MVKKIKLPKFLKDIIKENIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTI
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
NWYVPPFENAFYGGVMTILRTADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNTA
EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEHHCCCCCCCE
EVIILNSMEAIQNIPPSDFSIATLWTTAYVLLKVNNTGLKFYFIQDFEPLFYPAGSTYAQ
EEEEEECHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCEEEEEEECCCCEEECCCCCEEC
AEATYRFGFYGIANTISLRKIYETEYAGIATHFTPCVDTKVFYPDSSIRKNDTSKRVFFY
CCEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEE
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGANWNPKEYGLEGVIENLGLLSYEETG
ECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEHHCC
NLYRSCHIGLSMMMTKHPSYLPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCI
CHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEECCCCCHHHHHHCCCCCEECCCCHHHH
AETISEAIDKYDDFDLIRNNAVNCIKYNHADWSVEIKKITDFIQYHAIKYSNCLVQSNGD
HHHHHHHHHCCCCHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHEEECCEEEECCCC
IFGSAVFVVNNGYRHYVPDLDWIIQHGFIWPTDVQVVSDEVLLSLLPGRPAPHKWTLENW
EEEEEEEEEECCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHC
VNPPRDVSMTIIREIAVSRLSGNGVEFGAAASPFPIPLHCDVKYADICPTNELQKKLYPG
CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEECCCCCHHHHHHCCCH
QVVYSLIEPDVITDFNTLEGIEDDSLDFIVACHVIEHTRNPIAAIEASYKKLRMGGSLVL
HHHHHHHCCCHHCCCHHHCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHCCCEEEE
VIPDKDRTFDKQRDLTTLEHLILDYESPLRERDKEHYFEFFKLAFPVLEENFISTVEKNF
EECCCCCCCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEQADIHYHTFTYESFSVLISHVCKNISPWSSVWSQPTLSNPIEDIEFYFVLTK
HHHCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]