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The map label for this gene is glcD [H]

Identifier: 17231935

GI number: 17231935

Start: 5326657

End: 5327997

Strand: Reverse

Name: glcD [H]

Synonym: all4443

Alternate gene names: 17231935

Gene position: 5327997-5326657 (Counterclockwise)

Preceding gene: 17231936

Following gene: 17231934

Centisome position: 83.07

GC content: 43.33

Gene sequence:

>1341_bases
ATGACGATCAAAAACTTGGATGTCCTCATTAACTCCCTAGAAGGTATTGAAACTATCACCGAACCCAATCAAGTAGCAAA
ATTATCCCAGGACTACCATACCTTTAGCCCCGTACTTGTCCCGAAACTAGCAGGCAAAGTTGGTGATATTGTAGTCCGTC
CCGCCAACGAACAAGAAGTCATCAAAGTTGCTGCTATTTGTGCAGAACATCGCGTACCTGTAACTGTCAGAGGGGCGGGA
ACGGGAAACTATGGGCAGTGCGTACCTCTACATGGAGGTGTCATTTTAGAGATGACAAAATTACAAGAAATCCTGTGGGT
AAAACCAGGTGTAGCTAGGGTAGAAGCAGGGGTGAAATTAGCCGCTTTAGATAAAAAAGCACGAGAAATTGGCTGGGAAA
TGCGGATGGCACCTTCTACTTATCGTACAGCCACAATTGGGGGATTTATTGCAGGTGGTAGTGGTGGTATTGGTTCAGTA
CAATATGGTTTATTAGGCGATCGCGGTAATCTTTTAGGATTGCGAGTTGTCACCTTAGAAACAGAACCCCGTGTCATTGA
GTTACGCGGCGACGATGTGCAGAAAGTAAACCATGCTTGGGGAATTAACGGCATTATCACACAAGTAGAAATTCCTCTGG
GGCCCGCCTATCCTTGGGCTGAAGTAATTGTCACCTTCGACGACTTCATCACAGCCGCCAAGTTTGGACAAACCTTAGCT
AATGCCGATGGCATGATTAAAAAGCTAGTAACTATCTTTGCATCACCAATTCCTCAATATTTCCACCCGCTACAGCCATA
CATCCCTAAAGATACTCACCCAGCTTTTTTAATAGTTGCCGAACCCAGTTTAGAATCATTACCTGGGTTAGTCCAGCAAT
ATGGCGGACAAATCACCTACCAAAAGCCAGCCCAGGAAGCAGGTAAGGGATTAAATCTAGCTGAATTTACTTGGAACCAC
ACTACGTTACACGCCCGAAATGTAGATACTTCCCTTACATACTTACAAAGCATCATTCCTGCGGATAAAGGCTTGGAATT
AGTCGCGGATTTATATCATTACTTTGGTGATGAAGTGATGGTTCATTTAGAATTTATTCGCGTTAATGGTGTGGTAGTAC
CTGCGGCTTTACAACTTGTACGCTACTCCACAGAAGAACGCCTAAATGAAATCATCCGCTACCACGAAGCTAAAGGCGTA
TTTATTGCCAATCCCCACACATATATTATTGAAGACGGCGGCAGGAAAGTTATTGACCCTGAGCAGTTAAAATTTAAGGA
AATTGTTGACCCTTACGGGTTAATGAATCCTGGTAAAAGTAAAGTATTAAAATTTTCATAA

Upstream 100 bases:

>100_bases
ATTAAAATTTTCCAACGCACAAGCACGCCAAGTCATAACTCTCCGCGCCCCTCCGCGCCAACCTTTGCGTCACTCTGCGT
TAAAAAAAGGATCTAAACCA

Downstream 100 bases:

>100_bases
ATTCATCAAGTTATTTTTAAGAATCTTCATTTATTAAAGAAGGGAAATTGTATCAATGCTTTAGTAGTTAAATGGCGAGT
CGGTGTGACCTGGCCATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MTIKNLDVLINSLEGIETITEPNQVAKLSQDYHTFSPVLVPKLAGKVGDIVVRPANEQEVIKVAAICAEHRVPVTVRGAG
TGNYGQCVPLHGGVILEMTKLQEILWVKPGVARVEAGVKLAALDKKAREIGWEMRMAPSTYRTATIGGFIAGGSGGIGSV
QYGLLGDRGNLLGLRVVTLETEPRVIELRGDDVQKVNHAWGINGIITQVEIPLGPAYPWAEVIVTFDDFITAAKFGQTLA
NADGMIKKLVTIFASPIPQYFHPLQPYIPKDTHPAFLIVAEPSLESLPGLVQQYGGQITYQKPAQEAGKGLNLAEFTWNH
TTLHARNVDTSLTYLQSIIPADKGLELVADLYHYFGDEVMVHLEFIRVNGVVVPAALQLVRYSTEERLNEIIRYHEAKGV
FIANPHTYIIEDGGRKVIDPEQLKFKEIVDPYGLMNPGKSKVLKFS

Sequences:

>Translated_446_residues
MTIKNLDVLINSLEGIETITEPNQVAKLSQDYHTFSPVLVPKLAGKVGDIVVRPANEQEVIKVAAICAEHRVPVTVRGAG
TGNYGQCVPLHGGVILEMTKLQEILWVKPGVARVEAGVKLAALDKKAREIGWEMRMAPSTYRTATIGGFIAGGSGGIGSV
QYGLLGDRGNLLGLRVVTLETEPRVIELRGDDVQKVNHAWGINGIITQVEIPLGPAYPWAEVIVTFDDFITAAKFGQTLA
NADGMIKKLVTIFASPIPQYFHPLQPYIPKDTHPAFLIVAEPSLESLPGLVQQYGGQITYQKPAQEAGKGLNLAEFTWNH
TTLHARNVDTSLTYLQSIIPADKGLELVADLYHYFGDEVMVHLEFIRVNGVVVPAALQLVRYSTEERLNEIIRYHEAKGV
FIANPHTYIIEDGGRKVIDPEQLKFKEIVDPYGLMNPGKSKVLKFS
>Mature_445_residues
TIKNLDVLINSLEGIETITEPNQVAKLSQDYHTFSPVLVPKLAGKVGDIVVRPANEQEVIKVAAICAEHRVPVTVRGAGT
GNYGQCVPLHGGVILEMTKLQEILWVKPGVARVEAGVKLAALDKKAREIGWEMRMAPSTYRTATIGGFIAGGSGGIGSVQ
YGLLGDRGNLLGLRVVTLETEPRVIELRGDDVQKVNHAWGINGIITQVEIPLGPAYPWAEVIVTFDDFITAAKFGQTLAN
ADGMIKKLVTIFASPIPQYFHPLQPYIPKDTHPAFLIVAEPSLESLPGLVQQYGGQITYQKPAQEAGKGLNLAEFTWNHT
TLHARNVDTSLTYLQSIIPADKGLELVADLYHYFGDEVMVHLEFIRVNGVVVPAALQLVRYSTEERLNEIIRYHEAKGVF
IANPHTYIIEDGGRKVIDPEQLKFKEIVDPYGLMNPGKSKVLKFS

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789351, Length=202, Percent_Identity=33.1683168316832, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787977, Length=151, Percent_Identity=35.0993377483444, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17534361, Length=152, Percent_Identity=30.9210526315789, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18921117, Length=238, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639277, Length=238, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639275, Length=238, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 48899; Mature: 48768

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKNLDVLINSLEGIETITEPNQVAKLSQDYHTFSPVLVPKLAGKVGDIVVRPANEQEV
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCHHHH
IKVAAICAEHRVPVTVRGAGTGNYGQCVPLHGGVILEMTKLQEILWVKPGVARVEAGVKL
HHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCEEEEHHHHHHHHHCCCCHHHHHCCEEE
AALDKKAREIGWEMRMAPSTYRTATIGGFIAGGSGGIGSVQYGLLGDRGNLLGLRVVTLE
EEHHHHHHHCCCEEEECCCCCCEEEECCEEECCCCCCCCEEEEEECCCCCEEEEEEEEEE
TEPRVIELRGDDVQKVNHAWGINGIITQVEIPLGPAYPWAEVIVTFDDFITAAKFGQTLA
CCCCEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCCCHHHHEEEHHHHHHHHHHHHHHH
NADGMIKKLVTIFASPIPQYFHPLQPYIPKDTHPAFLIVAEPSLESLPGLVQQYGGQITY
CCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEE
QKPAQEAGKGLNLAEFTWNHTTLHARNVDTSLTYLQSIIPADKGLELVADLYHYFGDEVM
ECCHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEE
VHLEFIRVNGVVVPAALQLVRYSTEERLNEIIRYHEAKGVFIANPHTYIIEDGGRKVIDP
EEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCH
EQLKFKEIVDPYGLMNPGKSKVLKFS
HHHHHHHHCCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
TIKNLDVLINSLEGIETITEPNQVAKLSQDYHTFSPVLVPKLAGKVGDIVVRPANEQEV
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCHHHH
IKVAAICAEHRVPVTVRGAGTGNYGQCVPLHGGVILEMTKLQEILWVKPGVARVEAGVKL
HHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCEEEEHHHHHHHHHCCCCHHHHHCCEEE
AALDKKAREIGWEMRMAPSTYRTATIGGFIAGGSGGIGSVQYGLLGDRGNLLGLRVVTLE
EEHHHHHHHCCCEEEECCCCCCEEEECCEEECCCCCCCCEEEEEECCCCCEEEEEEEEEE
TEPRVIELRGDDVQKVNHAWGINGIITQVEIPLGPAYPWAEVIVTFDDFITAAKFGQTLA
CCCCEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCCCHHHHEEEHHHHHHHHHHHHHHH
NADGMIKKLVTIFASPIPQYFHPLQPYIPKDTHPAFLIVAEPSLESLPGLVQQYGGQITY
CCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEE
QKPAQEAGKGLNLAEFTWNHTTLHARNVDTSLTYLQSIIPADKGLELVADLYHYFGDEVM
ECCHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEE
VHLEFIRVNGVVVPAALQLVRYSTEERLNEIIRYHEAKGVFIANPHTYIIEDGGRKVIDP
EEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCH
EQLKFKEIVDPYGLMNPGKSKVLKFS
HHHHHHHHCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]