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The map label for this gene is amsH [H]

Identifier: 17231880

GI number: 17231880

Start: 5260248

End: 5261729

Strand: Reverse

Name: amsH [H]

Synonym: all4388

Alternate gene names: 17231880

Gene position: 5261729-5260248 (Counterclockwise)

Preceding gene: 17231881

Following gene: 17231879

Centisome position: 82.04

GC content: 46.49

Gene sequence:

>1482_bases
ATGCTTAACACAGGTTCGCTGAAATTTCTATCACAGCCAGCTGTGGGTGCAGCTTTGCTAACTGCTGCTCATCTCGTTGT
GCCGTTTGCCAGCGTAGCTCAGGGACAACAAGTATTTCCTAATTCGCAAACAGTACCCCCTACTAACCAACGAGTATCAC
CACCAGTACAAGTAGATACAAAATACTTGTTGGGAGGCGGCGATCTAATTCGTGTAAATGTATTTGAAGTTCCCGAATAT
GGTGGTGAATATCAAATTCCTCCAGGTGGAGCTATCAACTTACCTTTAATCGGCAGTGTTTCTGTTCAGGGGTTCACGAC
AGAACAAGCAGCTGATGTGATCACTGACAGATATCGCAGGTTTCTGAAACGTCCCCAGATTTCTGTAAATCTTTTATCCC
CTCGCCCCATCAATATCTTAGTTGCTGGGGAGGTCACACGCCCAGGCTCTTACACTTTGAGCTTGCAAGGCGGTGCAGGT
AATAATCCAGGGGTACAATATCCCACTGTCTTGGCTGCACTCACCACAGCCCAGGGTGTTACCTTAGCAGCAGATGTCAC
TCAAGTGAAGCTGAGACGTAAAACCAGCAATTCTACTGAGCAAATCGTGAGTCTAAATTTGAAGGAACTCATCCAAACTG
GTAGCTCTTCACAAGATATTACTTTAAGGGATGGAGACGTTATAGTCGTGCCAACTGCTACTAGCTTCAACGTAGCAGAA
GCACGTAATCTATTTGCTGCTAACTTTGCTGCTAGCCAAACAGCACCCCGCACAGTAGCCATTATTGGTCAAGTCAATCG
TCCTGGCTCATATCTTGTGAGTGCGGGTGCGACAGAAGCTCAGGCTGGTGGCGCTGGGGCTAGTGGTAGTGGTTTACCTA
CGGTGACACGAGCAATTCAATTAGCTGGCGGTATTACTTCCCAAGCAGATGTTACCAAGATCAAATTACGCCGACCGACA
AGGACTACAGGGGAACAAACGATAGACCTCAATCTTTTGGAACTATTGCGGACTGGTGATGTTAATCAAGACGTAATTGT
CCAAGATGGAGACACAATTGTGATTCCTACTGCTACTGAGGTTAATCCAGCACTAGCGACGGAATTAGCAACTACTACTT
TGTCTCCTAATACAATTCAGGTTGGTGTGGTAGGTGAAGTTAAACGCCCAGGAGCCGTAGACATTAGACCAAATAGCTCC
TTAAACCAAGCACTACTCGCGGCTGGTGGATTTAATGACGCTAGAGCGCGTAGCGCCAGTGTAGAGTTGATGCGTCTTAA
CCCCAATGGTTCAGTGACTAAGCGTGAGATCAAAGTTGATTTCAACCAAGGAATTAACGAAGAGACTAATCCCATACTCC
GGAACAACGATATTGTGGTGGTTGGTCGCTCAGGTCTAGCCAGGACTAGTGATAGCGTCGGCTTGATATCGGGGCCTTTA
GGTACGTTCTTGGGTGTAGTTAGACTGATATTTGGTTTTTAA

Upstream 100 bases:

>100_bases
GGAAAATGAGAATTGTCGGGAAACTTCAATACTTAAGTATAGTCAAGATTAAAATGTTTAGACAATACTTTACCGATGGT
AGTCTCAGAGTTTAAAAAAT

Downstream 100 bases:

>100_bases
CACAAGCTGTAAACTGGGGGCGTTGTCAAATTTGTCTGTCCCCAGATTTTTTTGTTGAACCAAATTAGGCGATAGTGCGA
TCGCCATTTATTTTTTAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MLNTGSLKFLSQPAVGAALLTAAHLVVPFASVAQGQQVFPNSQTVPPTNQRVSPPVQVDTKYLLGGGDLIRVNVFEVPEY
GGEYQIPPGGAINLPLIGSVSVQGFTTEQAADVITDRYRRFLKRPQISVNLLSPRPINILVAGEVTRPGSYTLSLQGGAG
NNPGVQYPTVLAALTTAQGVTLAADVTQVKLRRKTSNSTEQIVSLNLKELIQTGSSSQDITLRDGDVIVVPTATSFNVAE
ARNLFAANFAASQTAPRTVAIIGQVNRPGSYLVSAGATEAQAGGAGASGSGLPTVTRAIQLAGGITSQADVTKIKLRRPT
RTTGEQTIDLNLLELLRTGDVNQDVIVQDGDTIVIPTATEVNPALATELATTTLSPNTIQVGVVGEVKRPGAVDIRPNSS
LNQALLAAGGFNDARARSASVELMRLNPNGSVTKREIKVDFNQGINEETNPILRNNDIVVVGRSGLARTSDSVGLISGPL
GTFLGVVRLIFGF

Sequences:

>Translated_493_residues
MLNTGSLKFLSQPAVGAALLTAAHLVVPFASVAQGQQVFPNSQTVPPTNQRVSPPVQVDTKYLLGGGDLIRVNVFEVPEY
GGEYQIPPGGAINLPLIGSVSVQGFTTEQAADVITDRYRRFLKRPQISVNLLSPRPINILVAGEVTRPGSYTLSLQGGAG
NNPGVQYPTVLAALTTAQGVTLAADVTQVKLRRKTSNSTEQIVSLNLKELIQTGSSSQDITLRDGDVIVVPTATSFNVAE
ARNLFAANFAASQTAPRTVAIIGQVNRPGSYLVSAGATEAQAGGAGASGSGLPTVTRAIQLAGGITSQADVTKIKLRRPT
RTTGEQTIDLNLLELLRTGDVNQDVIVQDGDTIVIPTATEVNPALATELATTTLSPNTIQVGVVGEVKRPGAVDIRPNSS
LNQALLAAGGFNDARARSASVELMRLNPNGSVTKREIKVDFNQGINEETNPILRNNDIVVVGRSGLARTSDSVGLISGPL
GTFLGVVRLIFGF
>Mature_493_residues
MLNTGSLKFLSQPAVGAALLTAAHLVVPFASVAQGQQVFPNSQTVPPTNQRVSPPVQVDTKYLLGGGDLIRVNVFEVPEY
GGEYQIPPGGAINLPLIGSVSVQGFTTEQAADVITDRYRRFLKRPQISVNLLSPRPINILVAGEVTRPGSYTLSLQGGAG
NNPGVQYPTVLAALTTAQGVTLAADVTQVKLRRKTSNSTEQIVSLNLKELIQTGSSSQDITLRDGDVIVVPTATSFNVAE
ARNLFAANFAASQTAPRTVAIIGQVNRPGSYLVSAGATEAQAGGAGASGSGLPTVTRAIQLAGGITSQADVTKIKLRRPT
RTTGEQTIDLNLLELLRTGDVNQDVIVQDGDTIVIPTATEVNPALATELATTTLSPNTIQVGVVGEVKRPGAVDIRPNSS
LNQALLAAGGFNDARARSASVELMRLNPNGSVTKREIKVDFNQGINEETNPILRNNDIVVVGRSGLARTSDSVGLISGPL
GTFLGVVRLIFGF

Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. Might be involved in the translocation of polysaccharides across the outer membrane [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1788376, Length=189, Percent_Identity=30.6878306878307, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787218, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 51580; Mature: 51580

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTGSLKFLSQPAVGAALLTAAHLVVPFASVAQGQQVFPNSQTVPPTNQRVSPPVQVDT
CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEECC
KYLLGGGDLIRVNVFEVPEYGGEYQIPPGGAINLPLIGSVSVQGFTTEQAADVITDRYRR
EEEECCCCEEEEEEEECCCCCCEEECCCCCEECCCEEECEEECCCCHHHHHHHHHHHHHH
FLKRPQISVNLLSPRPINILVAGEVTRPGSYTLSLQGGAGNNPGVQYPTVLAALTTAQGV
HHHCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCE
TLAADVTQVKLRRKTSNSTEQIVSLNLKELIQTGSSSQDITLRDGDVIVVPTATSFNVAE
EEEECHHEEEEECCCCCCHHHHHHCCHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHH
ARNLFAANFAASQTAPRTVAIIGQVNRPGSYLVSAGATEAQAGGAGASGSGLPTVTRAIQ
HHHHEEECCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
LAGGITSQADVTKIKLRRPTRTTGEQTIDLNLLELLRTGDVNQDVIVQDGDTIVIPTATE
HHCCCCCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCCEEEECCCEEEEECCCC
VNPALATELATTTLSPNTIQVGVVGEVKRPGAVDIRPNSSLNQALLAAGGFNDARARSAS
CCHHHHHHHHHEECCCCEEEEEEEECCCCCCEEEECCCCCCCHHHEECCCCCHHHCCCCE
VELMRLNPNGSVTKREIKVDFNQGINEETNPILRNNDIVVVGRSGLARTSDSVGLISGPL
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCEEEECCH
GTFLGVVRLIFGF
HHHHHHHHHHHCC
>Mature Secondary Structure
MLNTGSLKFLSQPAVGAALLTAAHLVVPFASVAQGQQVFPNSQTVPPTNQRVSPPVQVDT
CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEECC
KYLLGGGDLIRVNVFEVPEYGGEYQIPPGGAINLPLIGSVSVQGFTTEQAADVITDRYRR
EEEECCCCEEEEEEEECCCCCCEEECCCCCEECCCEEECEEECCCCHHHHHHHHHHHHHH
FLKRPQISVNLLSPRPINILVAGEVTRPGSYTLSLQGGAGNNPGVQYPTVLAALTTAQGV
HHHCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCE
TLAADVTQVKLRRKTSNSTEQIVSLNLKELIQTGSSSQDITLRDGDVIVVPTATSFNVAE
EEEECHHEEEEECCCCCCHHHHHHCCHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHH
ARNLFAANFAASQTAPRTVAIIGQVNRPGSYLVSAGATEAQAGGAGASGSGLPTVTRAIQ
HHHHEEECCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
LAGGITSQADVTKIKLRRPTRTTGEQTIDLNLLELLRTGDVNQDVIVQDGDTIVIPTATE
HHCCCCCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCCEEEECCCEEEEECCCC
VNPALATELATTTLSPNTIQVGVVGEVKRPGAVDIRPNSSLNQALLAAGGFNDARARSAS
CCHHHHHHHHHEECCCCEEEEEEEECCCCCCEEEECCCCCCCHHHEECCCCCHHHCCCCE
VELMRLNPNGSVTKREIKVDFNQGINEETNPILRNNDIVVVGRSGLARTSDSVGLISGPL
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCEEEECCH
GTFLGVVRLIFGF
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7596293 [H]