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The map label for this gene is ycjS [C]

Identifier: 17231744

GI number: 17231744

Start: 5100651

End: 5101775

Strand: Reverse

Name: ycjS [C]

Synonym: all4252

Alternate gene names: 17231744

Gene position: 5101775-5100651 (Counterclockwise)

Preceding gene: 17231745

Following gene: 17231740

Centisome position: 79.54

GC content: 41.78

Gene sequence:

>1125_bases
ATGGTGTCTGGATTACAAGCAAATCAGGGTAAAATTGGAGTAGCGATCGCCGGGACTGGTTTTGGTCAAAAAGTTCACAT
ACCTGCCTTTCAAGCCCATCATCGCACTGATATAGTTGCGATTTATCACCGCGATATTCATAAAGCTAAAGCAATTGCCG
AAGCAAACAATATTCCCCATGCCTTTGACACTATAGCTGATACCGTTAATCTGCCGGAAGTACAAGCAGTCAGTATCGCT
ACACCACCTTTCCTGCATTATGAAATGGGGAAAACAGTATTGCAAGCAGGAAAACATTTACTACTAGAAAAGCCTGTCAC
CCTAAATGTAGCTGAAGCACAAGAATTGTATCAATTAGCAAAAAAGCAAGGTGTTATTGCCACTGTAGATTTTGAGTTTC
GTTTTGTCCCTGCATGGCAACTATTCGCTGAACTTCTATCATCAGGTTATGTAGGAACTCCTCGCCTGATTAGAATTGAT
TGGTTAGGTTCTTCTCGTGCCGATACTTCCCGTCCTTGGAACTGGTATTCTTCTAAGGAAAAGGGTGGTGGTGCGTTAGG
TTCATTAGGTTCCCACGCTTTCGATTATATTTATTGGCTATTTGGTTCAGTCCGCCGATTAAATGCCCATTTGACTACAG
CTATTCCTCAACGGATTGACTCTATTAGTGGTGAATTAAAAGCAGTAGAGACAGACGATACTTGTCTGCTGTCACTAGAA
TTAGCAAATGGTACGCCCTGCCAAGTGACTATCAGCGCTGCTGTTCATGCTTCTAGAACACACTGGATGGAAGTATATGG
CGATCGCGGTACTCTAGTAATTGGTAGTGAAAATCAAAAAGATTACATCCACGGTTTTCGCGTTTGGGGTTCCCAACCAG
GTCAACCTCTTCAAGAAATCGAAATCCCACCCAAATTACTATTTCCCCAACATTACACCGACGGACGCATTTGTGCATTC
TTGCGGGTAGTAGACCAATGGGTACAAGGCATTGATCAGCAAAAGCCAATAGTACCATCTTTAAAAGAAGGTATTTATTC
CCAGTTATTAATGGATTTATCTCATCAATCTTATATAACTGCTAGCTGGGTAGATGTGCCAAATGTGGAAGATTATCTAA
TTTAA

Upstream 100 bases:

>100_bases
TCTTCCGGTCAACAGTCAACATGAAAAGATTGCTCAAAGATGTTACGCCTAGCTTGCTTCGCCGTAGAATTACACATAAA
CTTTTAGTTATTTAAATTTT

Downstream 100 bases:

>100_bases
TTTGCGCTTTCCACTTATTACTTCATCTCTCTCATGATAAAAATAGCGGGATTATTTCCCGCTATCTGTTAGTTAGCTTT
GCTCTTGAAGTGGAATTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MVSGLQANQGKIGVAIAGTGFGQKVHIPAFQAHHRTDIVAIYHRDIHKAKAIAEANNIPHAFDTIADTVNLPEVQAVSIA
TPPFLHYEMGKTVLQAGKHLLLEKPVTLNVAEAQELYQLAKKQGVIATVDFEFRFVPAWQLFAELLSSGYVGTPRLIRID
WLGSSRADTSRPWNWYSSKEKGGGALGSLGSHAFDYIYWLFGSVRRLNAHLTTAIPQRIDSISGELKAVETDDTCLLSLE
LANGTPCQVTISAAVHASRTHWMEVYGDRGTLVIGSENQKDYIHGFRVWGSQPGQPLQEIEIPPKLLFPQHYTDGRICAF
LRVVDQWVQGIDQQKPIVPSLKEGIYSQLLMDLSHQSYITASWVDVPNVEDYLI

Sequences:

>Translated_374_residues
MVSGLQANQGKIGVAIAGTGFGQKVHIPAFQAHHRTDIVAIYHRDIHKAKAIAEANNIPHAFDTIADTVNLPEVQAVSIA
TPPFLHYEMGKTVLQAGKHLLLEKPVTLNVAEAQELYQLAKKQGVIATVDFEFRFVPAWQLFAELLSSGYVGTPRLIRID
WLGSSRADTSRPWNWYSSKEKGGGALGSLGSHAFDYIYWLFGSVRRLNAHLTTAIPQRIDSISGELKAVETDDTCLLSLE
LANGTPCQVTISAAVHASRTHWMEVYGDRGTLVIGSENQKDYIHGFRVWGSQPGQPLQEIEIPPKLLFPQHYTDGRICAF
LRVVDQWVQGIDQQKPIVPSLKEGIYSQLLMDLSHQSYITASWVDVPNVEDYLI
>Mature_374_residues
MVSGLQANQGKIGVAIAGTGFGQKVHIPAFQAHHRTDIVAIYHRDIHKAKAIAEANNIPHAFDTIADTVNLPEVQAVSIA
TPPFLHYEMGKTVLQAGKHLLLEKPVTLNVAEAQELYQLAKKQGVIATVDFEFRFVPAWQLFAELLSSGYVGTPRLIRID
WLGSSRADTSRPWNWYSSKEKGGGALGSLGSHAFDYIYWLFGSVRRLNAHLTTAIPQRIDSISGELKAVETDDTCLLSLE
LANGTPCQVTISAAVHASRTHWMEVYGDRGTLVIGSENQKDYIHGFRVWGSQPGQPLQEIEIPPKLLFPQHYTDGRICAF
LRVVDQWVQGIDQQKPIVPSLKEGIYSQLLMDLSHQSYITASWVDVPNVEDYLI

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI9506675, Length=377, Percent_Identity=24.1379310344828, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI226371727, Length=375, Percent_Identity=24.5333333333333, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI7657212, Length=235, Percent_Identity=26.3829787234043, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787574, Length=201, Percent_Identity=28.8557213930348, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789848, Length=143, Percent_Identity=32.1678321678322, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081947, Length=200, Percent_Identity=28, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323975, Length=297, Percent_Identity=23.9057239057239, Blast_Score=76, Evalue=8e-15,
Organism=Drosophila melanogaster, GI19920536, Length=375, Percent_Identity=24.2666666666667, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24581117, Length=216, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24581115, Length=156, Percent_Identity=29.4871794871795, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41475; Mature: 41475

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSGLQANQGKIGVAIAGTGFGQKVHIPAFQAHHRTDIVAIYHRDIHKAKAIAEANNIPH
CCCCCCCCCCEEEEEEEECCCCCEEECCCHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCH
AFDTIADTVNLPEVQAVSIATPPFLHYEMGKTVLQAGKHLLLEKPVTLNVAEAQELYQLA
HHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHH
KKQGVIATVDFEFRFVPAWQLFAELLSSGYVGTPRLIRIDWLGSSRADTSRPWNWYSSKE
HHCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
KGGGALGSLGSHAFDYIYWLFGSVRRLNAHLTTAIPQRIDSISGELKAVETDDTCLLSLE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEE
LANGTPCQVTISAAVHASRTHWMEVYGDRGTLVIGSENQKDYIHGFRVWGSQPGQPLQEI
ECCCCCEEEEEEEEHHCCCCEEEEEECCCCEEEECCCCCCHHHEEEEEECCCCCCCHHHC
EIPPKLLFPQHYTDGRICAFLRVVDQWVQGIDQQKPIVPSLKEGIYSQLLMDLSHQSYIT
CCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
ASWVDVPNVEDYLI
EEECCCCCCHHHCC
>Mature Secondary Structure
MVSGLQANQGKIGVAIAGTGFGQKVHIPAFQAHHRTDIVAIYHRDIHKAKAIAEANNIPH
CCCCCCCCCCEEEEEEEECCCCCEEECCCHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCH
AFDTIADTVNLPEVQAVSIATPPFLHYEMGKTVLQAGKHLLLEKPVTLNVAEAQELYQLA
HHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHH
KKQGVIATVDFEFRFVPAWQLFAELLSSGYVGTPRLIRIDWLGSSRADTSRPWNWYSSKE
HHCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
KGGGALGSLGSHAFDYIYWLFGSVRRLNAHLTTAIPQRIDSISGELKAVETDDTCLLSLE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEE
LANGTPCQVTISAAVHASRTHWMEVYGDRGTLVIGSENQKDYIHGFRVWGSQPGQPLQEI
ECCCCCEEEEEEEEHHCCCCEEEEEECCCCEEEECCCCCCHHHEEEEEECCCCCCCHHHC
EIPPKLLFPQHYTDGRICAFLRVVDQWVQGIDQQKPIVPSLKEGIYSQLLMDLSHQSYIT
CCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
ASWVDVPNVEDYLI
EEECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]