| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is priA [H]
Identifier: 17231740
GI number: 17231740
Start: 5094623
End: 5097163
Strand: Reverse
Name: priA [H]
Synonym: all4248
Alternate gene names: 17231740
Gene position: 5097163-5094623 (Counterclockwise)
Preceding gene: 17231744
Following gene: 17231738
Centisome position: 79.47
GC content: 44.71
Gene sequence:
>2541_bases ATGTATATTAATGACATCAATTCCCTGGATTTAGTAGTGAGTGAAAATCAGGAATTATACCGAGTAATAACCAATGAAAA TCAGTATGTCGAAGTATTAGTAGACTTTCCTGGTAATTCAGGATTATTCACTTACCGAATACCAAGTCAGTTAGAAATCA GACCTGGGGATATATTAAGTGTACCTTTTGGCTCCCAACAATTGGGAGCGATCGCCATTCGTTTATTGGCAGAACCCAAC ATTGATCTAGCACCAGACAAGATCCGGGAAGTAGAGGACGTAGTAACTTCCGGATTTTTTGCTAGTGCTTATTGGGAATT ATTAAATAGAGTAGCGTCATATTACTACACACCTTTAATTCAAGTAATAAGAGTAGCATTACCACCAGGATTATTAGGGC GATCGCAACGTCGCGTGCGCTTGATCAAAAGAGAAAATGAACAGCTATTTGTCAGCTTTTTAAGTCCCCCAGCGCAGCAA ATTCTCCAACTACTGCAATCCCAACCATCAGGAGATTATAGTTTCCATTATTTGCAACAAAAAGTTAAAGCTACTTATCG AGGGATGCGGGAATTATTACGCATAGGTTTAGTAGAAAGTTACTTAGAACCGCCCCGGACAAATCGCCCAAAATTGCAAA AAGCAGTCATATTAATTGATACAGTTGATCGTGATTTAACCAACCGTCAAAGGGAGATTTTAGAAGTATTGCGGAGACGT GGCGGTGAGCTATGGCACAGTGAATTGTTACAAATTTGTAGTACCAGTTCCTCTACCCTGAAGTCGATGGAACAAAAAGG TTACATTGCTATAGAAGAAAGAGAGGTATTGCGGACAGAACAAGGACAAGTATTAGATTTAGATACACCGAAGTTATTAA ATATTGCTCAAGAGAATGCCTTAGCAACTATCCAAAAGTTAAATGGATTTGCTCAAGTATTGTTGCACGGAGTCACAGGT TCCGGCAAAACAGAAGTATATTTACAAGCAATCGCTCCAATACTCGCACAAGGCAAATCAGCTCTAGTATTAGTCCCAGA AATCGGTCTCACACCCCAACTCACAGACCGTTTCCGCGCCCGTTTTGGTAACAATAAAATCAGCGTCTATCACAGCGCCC TCTCCGATGGTGAACGCTACGACACTTGGCGACAAATGCTGACAGGCACACCCCAAATTGTCATCGGCACACGTAGCGCC ATCTTCGCACCCTTACCCAACTTAGGCTTAATCATCCTCGACGAAGAACATGACTCCAGCTTTAAACAAGACTCCCCCAT CCCCACCTACCACGCCCGCACCGTTGCCCAATGGCGTGCAGAACTAGAAAACTGTCCCCTAGTTTTAGGTTCCGCCACAC CTTCCTTAGAAAGTTGGGTAAGCGTGAGTCAACAGTCAGCAGTCCACAGTCAACAGTCAGCAGTCAACAGTCCACAGTCA ATAGTCAATAGCCTCGCTCTCTACTCCCCCCTCCCGGAACGCATCAACTCTCGCCCCCTACCACCAGTAGAGATAGTTGA TATGCGGCAAGAGTTACAGGATGGGAATCGTTCTATATTTAGTCGGTCGTTACAAGCAGCTTTACAACACCTGGAACAAA CGGGAAAACAGGGGATTTTATTTATCCATCGTCGGGGACATAGTACGTTTGTGTCGTGTCGTAGTTGTGGCTATGTAGTG GAGTGTCCCCACTGTGATGTGTCCCTGGCTTATCACCAGACAGAAGCAGGCGCGCCTCAATTGTTGCGCTGTCATTACTG TAATTATGTGAGCGTACATCCCAAACACTGCCCAGAATGCAGTTCACCTTACCTGAAATTTTTCGGTAGCGGTACTCAAC GAGTCGCCCAGGAATTAAGCCGACAGTTTCCGGGGTTAAAATACATCCGCTTTGATAGTGATACCACCCGCAACAAAGGC GCACACCGTACCCTACTGACTCAGTTTGCCAATGGGGAAGCGAATTTATTAGTGGGGACGCAAATGTTAACTAAGGGGTT AGATTTACCCCAGGTGACACTTGTGGGTGTCGTCGCTGCTGATGGACTGTTGAATTTGTCAGATTATCGCGCCAGCGAAC GGGCATTTCAAACTCTGACTCAGGTAGCTGGTAGAGCTGGCAGAGGTGATGACCCTGGTAGGGTGATTATGCAAACTTAC ACACCAGAACATCCAGTAATTGAAGCAGTCAAGTATCACAATTATCAGTCTTTTGTGCAGGCGGAATTGGAACAACGGCA AGCCCTCAATTATCCACCTTATGGTAGGTTAATTTTATTGCGACTGAGTAGCTTTGATCCTATACAAGTACAGAATACAA CTCAGGCGATCGCCACAGTATTAAATGCCAACCCAGGATTTGAATTATTAGGCCCAGCACCAGCTAGTGTGATGCGGGTA GCAAACCGTTATCGCTGGCAAATATTACTCAAGTTTGCCCCCGAAGCACTACCCCAATTACCAGACTGGGACGAAGTACG TCTACTTTGTCCTGATGGTGTCAACTTAACTATAGATGTAGACCCATTAAATATTATGTGA
Upstream 100 bases:
>100_bases TTTATTCTAAAGAAAGAAAAATTAAAATATAACGAGCTAAGAGAACTTTACGGACTGAGTTTAAGGCAATAAGAATATTT ATCTTTAAAATTCAAGAACT
Downstream 100 bases:
>100_bases TGCGACAAATAGCCAGCGACCACCTACAACCAACAATCCACACCCGATTACCAGCCCAAGTACATATAAAGTCTGGCTGG TACGTTCGACTTTAACCAAA
Product: primosome assembly protein PriA
Products: NA
Alternate protein names: ATP-dependent helicase priA; Replication factor Y [H]
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MYINDINSLDLVVSENQELYRVITNENQYVEVLVDFPGNSGLFTYRIPSQLEIRPGDILSVPFGSQQLGAIAIRLLAEPN IDLAPDKIREVEDVVTSGFFASAYWELLNRVASYYYTPLIQVIRVALPPGLLGRSQRRVRLIKRENEQLFVSFLSPPAQQ ILQLLQSQPSGDYSFHYLQQKVKATYRGMRELLRIGLVESYLEPPRTNRPKLQKAVILIDTVDRDLTNRQREILEVLRRR GGELWHSELLQICSTSSSTLKSMEQKGYIAIEEREVLRTEQGQVLDLDTPKLLNIAQENALATIQKLNGFAQVLLHGVTG SGKTEVYLQAIAPILAQGKSALVLVPEIGLTPQLTDRFRARFGNNKISVYHSALSDGERYDTWRQMLTGTPQIVIGTRSA IFAPLPNLGLIILDEEHDSSFKQDSPIPTYHARTVAQWRAELENCPLVLGSATPSLESWVSVSQQSAVHSQQSAVNSPQS IVNSLALYSPLPERINSRPLPPVEIVDMRQELQDGNRSIFSRSLQAALQHLEQTGKQGILFIHRRGHSTFVSCRSCGYVV ECPHCDVSLAYHQTEAGAPQLLRCHYCNYVSVHPKHCPECSSPYLKFFGSGTQRVAQELSRQFPGLKYIRFDSDTTRNKG AHRTLLTQFANGEANLLVGTQMLTKGLDLPQVTLVGVVAADGLLNLSDYRASERAFQTLTQVAGRAGRGDDPGRVIMQTY TPEHPVIEAVKYHNYQSFVQAELEQRQALNYPPYGRLILLRLSSFDPIQVQNTTQAIATVLNANPGFELLGPAPASVMRV ANRYRWQILLKFAPEALPQLPDWDEVRLLCPDGVNLTIDVDPLNIM
Sequences:
>Translated_846_residues MYINDINSLDLVVSENQELYRVITNENQYVEVLVDFPGNSGLFTYRIPSQLEIRPGDILSVPFGSQQLGAIAIRLLAEPN IDLAPDKIREVEDVVTSGFFASAYWELLNRVASYYYTPLIQVIRVALPPGLLGRSQRRVRLIKRENEQLFVSFLSPPAQQ ILQLLQSQPSGDYSFHYLQQKVKATYRGMRELLRIGLVESYLEPPRTNRPKLQKAVILIDTVDRDLTNRQREILEVLRRR GGELWHSELLQICSTSSSTLKSMEQKGYIAIEEREVLRTEQGQVLDLDTPKLLNIAQENALATIQKLNGFAQVLLHGVTG SGKTEVYLQAIAPILAQGKSALVLVPEIGLTPQLTDRFRARFGNNKISVYHSALSDGERYDTWRQMLTGTPQIVIGTRSA IFAPLPNLGLIILDEEHDSSFKQDSPIPTYHARTVAQWRAELENCPLVLGSATPSLESWVSVSQQSAVHSQQSAVNSPQS IVNSLALYSPLPERINSRPLPPVEIVDMRQELQDGNRSIFSRSLQAALQHLEQTGKQGILFIHRRGHSTFVSCRSCGYVV ECPHCDVSLAYHQTEAGAPQLLRCHYCNYVSVHPKHCPECSSPYLKFFGSGTQRVAQELSRQFPGLKYIRFDSDTTRNKG AHRTLLTQFANGEANLLVGTQMLTKGLDLPQVTLVGVVAADGLLNLSDYRASERAFQTLTQVAGRAGRGDDPGRVIMQTY TPEHPVIEAVKYHNYQSFVQAELEQRQALNYPPYGRLILLRLSSFDPIQVQNTTQAIATVLNANPGFELLGPAPASVMRV ANRYRWQILLKFAPEALPQLPDWDEVRLLCPDGVNLTIDVDPLNIM >Mature_846_residues MYINDINSLDLVVSENQELYRVITNENQYVEVLVDFPGNSGLFTYRIPSQLEIRPGDILSVPFGSQQLGAIAIRLLAEPN IDLAPDKIREVEDVVTSGFFASAYWELLNRVASYYYTPLIQVIRVALPPGLLGRSQRRVRLIKRENEQLFVSFLSPPAQQ ILQLLQSQPSGDYSFHYLQQKVKATYRGMRELLRIGLVESYLEPPRTNRPKLQKAVILIDTVDRDLTNRQREILEVLRRR GGELWHSELLQICSTSSSTLKSMEQKGYIAIEEREVLRTEQGQVLDLDTPKLLNIAQENALATIQKLNGFAQVLLHGVTG SGKTEVYLQAIAPILAQGKSALVLVPEIGLTPQLTDRFRARFGNNKISVYHSALSDGERYDTWRQMLTGTPQIVIGTRSA IFAPLPNLGLIILDEEHDSSFKQDSPIPTYHARTVAQWRAELENCPLVLGSATPSLESWVSVSQQSAVHSQQSAVNSPQS IVNSLALYSPLPERINSRPLPPVEIVDMRQELQDGNRSIFSRSLQAALQHLEQTGKQGILFIHRRGHSTFVSCRSCGYVV ECPHCDVSLAYHQTEAGAPQLLRCHYCNYVSVHPKHCPECSSPYLKFFGSGTQRVAQELSRQFPGLKYIRFDSDTTRNKG AHRTLLTQFANGEANLLVGTQMLTKGLDLPQVTLVGVVAADGLLNLSDYRASERAFQTLTQVAGRAGRGDDPGRVIMQTY TPEHPVIEAVKYHNYQSFVQAELEQRQALNYPPYGRLILLRLSSFDPIQVQNTTQAIATVLNANPGFELLGPAPASVMRV ANRYRWQILLKFAPEALPQLPDWDEVRLLCPDGVNLTIDVDPLNIM
Specific function: Recognizes a specific hairpin sequence on phiX ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase. PriA then functions as a helicase
COG id: COG1198
COG function: function code L; Primosomal protein N' (replication factor Y) - superfamily II helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1790370, Length=820, Percent_Identity=33.5365853658537, Blast_Score=387, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR005259 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: NA
Molecular weight: Translated: 94777; Mature: 94777
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYINDINSLDLVVSENQELYRVITNENQYVEVLVDFPGNSGLFTYRIPSQLEIRPGDILS CCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCEEEECCCCEEE VPFGSQQLGAIAIRLLAEPNIDLAPDKIREVEDVVTSGFFASAYWELLNRVASYYYTPLI CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH QVIRVALPPGLLGRSQRRVRLIKRENEQLFVSFLSPPAQQILQLLQSQPSGDYSFHYLQQ HHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH KVKATYRGMRELLRIGLVESYLEPPRTNRPKLQKAVILIDTVDRDLTNRQREILEVLRRR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC GGELWHSELLQICSTSSSTLKSMEQKGYIAIEEREVLRTEQGQVLDLDTPKLLNIAQENA CCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECHHHHHCCCCCEEECCCCHHHHHHHHHH LATIQKLNGFAQVLLHGVTGSGKTEVYLQAIAPILAQGKSALVLVPEIGLTPQLTDRFRA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH RFGNNKISVYHSALSDGERYDTWRQMLTGTPQIVIGTRSAIFAPLPNLGLIILDEEHDSS HHCCCEEEEEEHHHCCCHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCEEEEECCCCCC FKQDSPIPTYHARTVAQWRAELENCPLVLGSATPSLESWVSVSQQSAVHSQQSAVNSPQS CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH IVNSLALYSPLPERINSRPLPPVEIVDMRQELQDGNRSIFSRSLQAALQHLEQTGKQGIL HHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEE FIHRRGHSTFVSCRSCGYVVECPHCDVSLAYHQTEAGAPQLLRCHYCNYVSVHPKHCPEC EEEECCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCC SSPYLKFFGSGTQRVAQELSRQFPGLKYIRFDSDTTRNKGAHRTLLTQFANGEANLLVGT CCCHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEH QMLTKGLDLPQVTLVGVVAADGLLNLSDYRASERAFQTLTQVAGRAGRGDDPGRVIMQTY HHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC TPEHPVIEAVKYHNYQSFVQAELEQRQALNYPPYGRLILLRLSSFDPIQVQNTTQAIATV CCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCHHHHHHHH LNANPGFELLGPAPASVMRVANRYRWQILLKFAPEALPQLPDWDEVRLLCPDGVNLTIDV HCCCCCCEEECCCHHHHHHHHHHHHEEHHEECCHHHCCCCCCCCCEEEECCCCCEEEEEC DPLNIM CCCCCC >Mature Secondary Structure MYINDINSLDLVVSENQELYRVITNENQYVEVLVDFPGNSGLFTYRIPSQLEIRPGDILS CCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCEEEECCCCEEE VPFGSQQLGAIAIRLLAEPNIDLAPDKIREVEDVVTSGFFASAYWELLNRVASYYYTPLI CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH QVIRVALPPGLLGRSQRRVRLIKRENEQLFVSFLSPPAQQILQLLQSQPSGDYSFHYLQQ HHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH KVKATYRGMRELLRIGLVESYLEPPRTNRPKLQKAVILIDTVDRDLTNRQREILEVLRRR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC GGELWHSELLQICSTSSSTLKSMEQKGYIAIEEREVLRTEQGQVLDLDTPKLLNIAQENA CCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECHHHHHCCCCCEEECCCCHHHHHHHHHH LATIQKLNGFAQVLLHGVTGSGKTEVYLQAIAPILAQGKSALVLVPEIGLTPQLTDRFRA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH RFGNNKISVYHSALSDGERYDTWRQMLTGTPQIVIGTRSAIFAPLPNLGLIILDEEHDSS HHCCCEEEEEEHHHCCCHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCEEEEECCCCCC FKQDSPIPTYHARTVAQWRAELENCPLVLGSATPSLESWVSVSQQSAVHSQQSAVNSPQS CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH IVNSLALYSPLPERINSRPLPPVEIVDMRQELQDGNRSIFSRSLQAALQHLEQTGKQGIL HHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEE FIHRRGHSTFVSCRSCGYVVECPHCDVSLAYHQTEAGAPQLLRCHYCNYVSVHPKHCPEC EEEECCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCC SSPYLKFFGSGTQRVAQELSRQFPGLKYIRFDSDTTRNKGAHRTLLTQFANGEANLLVGT CCCHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEH QMLTKGLDLPQVTLVGVVAADGLLNLSDYRASERAFQTLTQVAGRAGRGDDPGRVIMQTY HHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC TPEHPVIEAVKYHNYQSFVQAELEQRQALNYPPYGRLILLRLSSFDPIQVQNTTQAIATV CCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCHHHHHHHH LNANPGFELLGPAPASVMRVANRYRWQILLKFAPEALPQLPDWDEVRLLCPDGVNLTIDV HCCCCCCEEECCCHHHHHHHHHHHHEEHHEECCHHHCCCCCCCCCEEEECCCCCEEEEEC DPLNIM CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]