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The map label for this gene is yciR [C]

Identifier: 17231717

GI number: 17231717

Start: 5061315

End: 5063012

Strand: Reverse

Name: yciR [C]

Synonym: all4225

Alternate gene names: 17231717

Gene position: 5063012-5061315 (Counterclockwise)

Preceding gene: 17231723

Following gene: 17231713

Centisome position: 78.94

GC content: 40.81

Gene sequence:

>1698_bases
ATGCAGTTAAATCAGAAGCTCTACTTATACTCAACTTTAGATAATTTTCGGTTACTCAACAAAAATTACACCGCCAAAAT
TATGTTGGTGGCGTTTTTAGGGACTCACATCCCGCTTTTAACTTTACTCTTCAGTTTCGTCATTTCCAATTCTTACTCTT
GGGAGATGACAATTAGAGTTCTGGTTATTGCTTTATTCGCTACGTTAATTGGTACGGTTGTTACCCTTTATGCACTTCAC
CATCTGCTGATTCCCGTCAATTTGACATCCGCCACGTTGCGAGACTACCTCAATAACAAAACTTTACCCAGTCTGCCTAC
AGAATTTGTAGATGAAGCGGGTACTCTCATGGCAGATACATCACAAACTCTCCACAAATTAGATGAGTTGATTGACTATA
TCAGCAATTATGACAAACTCACAGGCTTGCCTAATCGGGAGCTATTGCGGGAACGTGTTAATCAGGCTTTATCACAGCAA
TACAGTCAAAAAATGTTAGCTGTAATGGTATTGGGAATTGATGACTTTACTGGCATAAGTCATGCGTTAGAACATGAGCA
ATCAAATTTGCTATTAAGAGCGGTAGCCCAGCGTTTGACCAGTTGTTTAGCACAGAAGGATATTTTAGCCCATTTAAGTG
GAGATGAATTTGCGATCGCTAGGGTAGAAATTCCCTCAATTGAAAGTATCATTAAGCTGTCACAACTGCTATTGACTACG
CTAAATAAACCTTTCACTATCCAAGGTAACCAGATTCATATCACAGCTAGCATCGGTATCACAATTAATCAACCAGATAA
TCTTCATGATGTTGACCAGTTGTTACAGCAGGCTCATGTAGCTTTGTATCAAGCCAAGCAACAAGGACGCAGCCAACACC
AGTTCTATTCGCCAGAGATTAACGCCCAACTGCAAGAACGATTAGCTTTAGAGAATGAACTACATGGAGCATTAGAGCGA
AATGAAATAGTGGTTTATTACCAACCCATTATCGATTTACAGACTAAGCAAATCACAGCCGTTGAAGCGTTAGTACGCTG
GCAACATCCTACACGAGGTTTAGTATCTCCCGCCAAGTTTATTCCCATTGCTGAAGCCAACGGCTTAATTGTGGAAATTG
GCGAATGGGTATTGCGAACTGCTTGTCTGCAAAACCGCACTTGGCAACTTGCAGGACTTCCACCAATACGGATGTCAGTA
AACCTGTCAGCTCGACAGTTTGAAGAATCAAATTTAGTAGAGCTTGTCAGTGAAATCATACAGGAGAGTGGTCTGCATCC
ATCGTATTTGGAACTGGAAGTCACTGAAAGTTCTTTAATGACAGACATTCAGCGCTCAGTCACAATACTCAAACAATTAC
GAGAATTAGGCGTATGGCTAGCTTTAGATGACTTCGGTACTGGTTATTCTTCTCTCAATTATCTAAAGCGCTTTCCTGTA
AATATGCTGAAAATTGATCGGTCATTTGTGCAGGATGTATGTTCTAATCCTGATAGTGCTGCGGTGACTAACGCTATTAT
TGCCCTAGCAAAAAGCTTACAATTAAAAATTACAGCTGAGGGCATCGAAACCCAGCAACAGCTTAGTTATTTACAAAAGC
GCGGATGTCAAGAAGGCCAGGGATATTACTTTGGTATCCCTGCACCTGCAAAGGAAATTATGGAAATATTGCAACCAAAA
GAGGCGATAGCAGTCTAA

Upstream 100 bases:

>100_bases
AAATAACCTCCAATTGGTTTGTTTCTACTGGCTGGTGAATCAGGATGACAAGAATACCTGAGTACCAATTTGCCAACTTT
CAAACCCCACATTAGGATCT

Downstream 100 bases:

>100_bases
TTTTTTGCCTTTATATTACATATATCTTCAGACTCTTTGCTAAACAATTCTAATAAACCAACTGTACCCACAAAAAATGT
ATAGATGCCATATTGAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MQLNQKLYLYSTLDNFRLLNKNYTAKIMLVAFLGTHIPLLTLLFSFVISNSYSWEMTIRVLVIALFATLIGTVVTLYALH
HLLIPVNLTSATLRDYLNNKTLPSLPTEFVDEAGTLMADTSQTLHKLDELIDYISNYDKLTGLPNRELLRERVNQALSQQ
YSQKMLAVMVLGIDDFTGISHALEHEQSNLLLRAVAQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIIKLSQLLLTT
LNKPFTIQGNQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEINAQLQERLALENELHGALER
NEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKFIPIAEANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSV
NLSARQFEESNLVELVSEIIQESGLHPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV
NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQGYYFGIPAPAKEIMEILQPK
EAIAV

Sequences:

>Translated_565_residues
MQLNQKLYLYSTLDNFRLLNKNYTAKIMLVAFLGTHIPLLTLLFSFVISNSYSWEMTIRVLVIALFATLIGTVVTLYALH
HLLIPVNLTSATLRDYLNNKTLPSLPTEFVDEAGTLMADTSQTLHKLDELIDYISNYDKLTGLPNRELLRERVNQALSQQ
YSQKMLAVMVLGIDDFTGISHALEHEQSNLLLRAVAQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIIKLSQLLLTT
LNKPFTIQGNQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEINAQLQERLALENELHGALER
NEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKFIPIAEANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSV
NLSARQFEESNLVELVSEIIQESGLHPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV
NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQGYYFGIPAPAKEIMEILQPK
EAIAV
>Mature_565_residues
MQLNQKLYLYSTLDNFRLLNKNYTAKIMLVAFLGTHIPLLTLLFSFVISNSYSWEMTIRVLVIALFATLIGTVVTLYALH
HLLIPVNLTSATLRDYLNNKTLPSLPTEFVDEAGTLMADTSQTLHKLDELIDYISNYDKLTGLPNRELLRERVNQALSQQ
YSQKMLAVMVLGIDDFTGISHALEHEQSNLLLRAVAQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIIKLSQLLLTT
LNKPFTIQGNQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEINAQLQERLALENELHGALER
NEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKFIPIAEANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSV
NLSARQFEESNLVELVSEIIQESGLHPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV
NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQGYYFGIPAPAKEIMEILQPK
EAIAV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=35.2112676056338, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI87081921, Length=447, Percent_Identity=34.0044742729307, Blast_Score=244, Evalue=2e-65,
Organism=Escherichia coli, GI226510982, Length=521, Percent_Identity=31.4779270633397, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=36.2204724409449, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI1787055, Length=399, Percent_Identity=26.3157894736842, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=35.15625, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=35.8024691358025, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=32.6923076923077, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=30.46875, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1786507, Length=279, Percent_Identity=32.6164874551971, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI1788849, Length=310, Percent_Identity=28.3870967741935, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI87082096, Length=418, Percent_Identity=26.3157894736842, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=28.3505154639175, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787410, Length=231, Percent_Identity=26.4069264069264, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=26.7080745341615, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786584, Length=240, Percent_Identity=25.4166666666667, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 63510; Mature: 63510

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNQKLYLYSTLDNFRLLNKNYTAKIMLVAFLGTHIPLLTLLFSFVISNSYSWEMTIRV
CCCCCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LVIALFATLIGTVVTLYALHHLLIPVNLTSATLRDYLNNKTLPSLPTEFVDEAGTLMADT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEECCC
SQTLHKLDELIDYISNYDKLTGLPNRELLRERVNQALSQQYSQKMLAVMVLGIDDFTGIS
HHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
HALEHEQSNLLLRAVAQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIIKLSQLLLTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
LNKPFTIQGNQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEI
CCCCEEEECCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
NAQLQERLALENELHGALERNEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKF
CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHE
IPIAEANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSVNLSARQFEESNLVELVSEII
EEEECCCCEEEHHHHHHHHHHHHCCCCEEECCCCCEEEEECCHHHHCCCCCHHHHHHHHH
QESGLHPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV
HHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCH
NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCC
GYYFGIPAPAKEIMEILQPKEAIAV
CEEEECCCCHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MQLNQKLYLYSTLDNFRLLNKNYTAKIMLVAFLGTHIPLLTLLFSFVISNSYSWEMTIRV
CCCCCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LVIALFATLIGTVVTLYALHHLLIPVNLTSATLRDYLNNKTLPSLPTEFVDEAGTLMADT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEECCC
SQTLHKLDELIDYISNYDKLTGLPNRELLRERVNQALSQQYSQKMLAVMVLGIDDFTGIS
HHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
HALEHEQSNLLLRAVAQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIIKLSQLLLTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
LNKPFTIQGNQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEI
CCCCEEEECCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
NAQLQERLALENELHGALERNEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKF
CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHE
IPIAEANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSVNLSARQFEESNLVELVSEII
EEEECCCCEEEHHHHHHHHHHHHCCCCEEECCCCCEEEEECCHHHHCCCCCHHHHHHHHH
QESGLHPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV
HHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCH
NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCC
GYYFGIPAPAKEIMEILQPKEAIAV
CEEEECCCCHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]