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The map label for this gene is rpmC

Identifier: 17231699

GI number: 17231699

Start: 5047373

End: 5047597

Strand: Reverse

Name: rpmC

Synonym: asl4207

Alternate gene names: 17231699

Gene position: 5047597-5047373 (Counterclockwise)

Preceding gene: 17231700

Following gene: 17231698

Centisome position: 78.7

GC content: 46.22

Gene sequence:

>225_bases
ATGCCACTTCCCAAAATTTCAGAAGCTAGAGAACTAAGTGACGAGAGATTGGTTGAGGAAATCACTGCTGTCAAAAAACA
ACTGTTTCAGTTGCGCTTACAAAAAGCTACCAGACAACTAGATAAACCTCACCAATTCCGCCATGCCCGCCACCGTCTAG
CCCAATTGTTAACGGTAGAAGGAGAGCGGAAACGGGCAGCCGCAACTCAATCGCCTCAAGAATAA

Upstream 100 bases:

>100_bases
AGAGATTGCTCGTGAAGCAATGCGTTTAGCAGCTTATAAGCTACCAATTAAAACTAAGTTTATTGTGCGTTCTCAAGTTG
TAGAGGAACAGGAGTAGGTT

Downstream 100 bases:

>100_bases
AAGTAGGAGATTATGGCAATCAAAGAACGCGTTGGCTTAGTAGTAAGCGACAAAATGCAGAAAACTGTAGTAGTCGCCAT
CGAAAACCGCGCTCCCCACC

Product: 50S ribosomal protein L29

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 73

Protein sequence:

>74_residues
MPLPKISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVEGERKRAAATQSPQE

Sequences:

>Translated_74_residues
MPLPKISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVEGERKRAAATQSPQE
>Mature_73_residues
PLPKISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVEGERKRAAATQSPQE

Specific function: Unknown

COG id: COG0255

COG function: function code J; Ribosomal protein L29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL29_ANAVT (Q3MFB3)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_321218.1
- HSSP:   Q9RXJ4
- ProteinModelPortal:   Q3MFB3
- SMR:   Q3MFB3
- STRING:   Q3MFB3
- GeneID:   3678845
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_0699
- eggNOG:   COG0255
- HOGENOM:   HBG730819
- OMA:   NTHRFKE
- ProtClustDB:   PRK00306
- BioCyc:   AVAR240292:AVA_0699-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00374_B
- InterPro:   IPR001854
- InterPro:   IPR018254
- Gene3D:   G3DSA:1.10.287.310
- TIGRFAMs:   TIGR00012

Pfam domain/function: PF00831 Ribosomal_L29; SSF46561 Ribosomal_L29

EC number: NA

Molecular weight: Translated: 8653; Mature: 8522

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPKISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GERKRAAATQSPQE
CHHHHHHCCCCCCC
>Mature Secondary Structure 
PLPKISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GERKRAAATQSPQE
CHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA