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The map label for this gene is deoC [H]

Identifier: 17231666

GI number: 17231666

Start: 5022225

End: 5022905

Strand: Direct

Name: deoC [H]

Synonym: alr4174

Alternate gene names: 17231666

Gene position: 5022225-5022905 (Clockwise)

Preceding gene: 17231665

Following gene: 17231667

Centisome position: 78.3

GC content: 44.35

Gene sequence:

>681_bases
ATGGCAGCAGGCTATCCGAACATTGATATTGCGCCATTTATCGATCACGCCCTGTTAACGCCAACGGCTACTCCAGAGCA
GGTTGACCAATGGTGTGAACAAGCAGACAGATATAATTTTGCGTCGGTTTGTTTGTATCCTACTTACGTAAAGCAAGCAG
CAGAATTTCTCCACGGCAAAAAACCTAAGGTTTGTACGGTAATTGGTTTTCCTACTGGGGCTACGACTCGCTCAGTCAAA
TTGTATGAGGCACTGGAAGCAGTGGAAAATGGAGCCACAGAGCTAGATGTAGTAATCAATTTGGGCTGCTTGAAATCTGG
TAATACGGAAGCAGTACACCGGGAAATTGCCGAAATTTGCGAAGAGACTGGGCAAGTAGTTAAAGTAATTTTGGAAACAA
ACTTACTAACGGATGCGGAAAAAAAAATCGCAGCCGATATAGCAATGGATGCAGGAGCCACATTCTTAAAAACCAACACA
GGTTGGAATGGCGGTGCTACAGTGGCAGACGTGAAGCTTTTAAAAGACATCACACGAGAAAGAGTGGGTATAAAAGCATC
TGGTGGAATTCGCACCCTCAATCAAGCCTTAGACTTAATATTAGCGGGTGCGACTAGACTAGGTACGTCTCGTGGTATAG
ATTTAATCCACCAGCGAGATAACCCGGAAAAAGTTGAATAG

Upstream 100 bases:

>100_bases
CTGCTTTTCCAGCTAGACTCGTAATAGATGTGCTTTAATTTATGTAAAGGGTATTAATTTTTTATAAAGCTTTATCATCA
ATCACTAACAAAAGGCAACA

Downstream 100 bases:

>100_bases
TCATTCGTTTTTGTCCTAAGTCATTTGTCCTTTGTCTTCACTAACGACCAATGACTAATGACCAATGACTAATGACTAAT
GACTAATGACCAATGACTAA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MAAGYPNIDIAPFIDHALLTPTATPEQVDQWCEQADRYNFASVCLYPTYVKQAAEFLHGKKPKVCTVIGFPTGATTRSVK
LYEALEAVENGATELDVVINLGCLKSGNTEAVHREIAEICEETGQVVKVILETNLLTDAEKKIAADIAMDAGATFLKTNT
GWNGGATVADVKLLKDITRERVGIKASGGIRTLNQALDLILAGATRLGTSRGIDLIHQRDNPEKVE

Sequences:

>Translated_226_residues
MAAGYPNIDIAPFIDHALLTPTATPEQVDQWCEQADRYNFASVCLYPTYVKQAAEFLHGKKPKVCTVIGFPTGATTRSVK
LYEALEAVENGATELDVVINLGCLKSGNTEAVHREIAEICEETGQVVKVILETNLLTDAEKKIAADIAMDAGATFLKTNT
GWNGGATVADVKLLKDITRERVGIKASGGIRTLNQALDLILAGATRLGTSRGIDLIHQRDNPEKVE
>Mature_225_residues
AAGYPNIDIAPFIDHALLTPTATPEQVDQWCEQADRYNFASVCLYPTYVKQAAEFLHGKKPKVCTVIGFPTGATTRSVKL
YEALEAVENGATELDVVINLGCLKSGNTEAVHREIAEICEETGQVVKVILETNLLTDAEKKIAADIAMDAGATFLKTNTG
WNGGATVADVKLLKDITRERVGIKASGGIRTLNQALDLILAGATRLGTSRGIDLIHQRDNPEKVE

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=172, Percent_Identity=38.3720930232558, Blast_Score=81, Evalue=6e-16,
Organism=Escherichia coli, GI1790841, Length=199, Percent_Identity=31.1557788944724, Blast_Score=73, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17533015, Length=172, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19922098, Length=193, Percent_Identity=32.6424870466321, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24352; Mature: 24221

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGYPNIDIAPFIDHALLTPTATPEQVDQWCEQADRYNFASVCLYPTYVKQAAEFLHGK
CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
KPKVCTVIGFPTGATTRSVKLYEALEAVENGATELDVVINLGCLKSGNTEAVHREIAEIC
CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHH
EETGQVVKVILETNLLTDAEKKIAADIAMDAGATFLKTNTGWNGGATVADVKLLKDITRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
RVGIKASGGIRTLNQALDLILAGATRLGTSRGIDLIHQRDNPEKVE
HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCC
>Mature Secondary Structure 
AAGYPNIDIAPFIDHALLTPTATPEQVDQWCEQADRYNFASVCLYPTYVKQAAEFLHGK
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
KPKVCTVIGFPTGATTRSVKLYEALEAVENGATELDVVINLGCLKSGNTEAVHREIAEIC
CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHH
EETGQVVKVILETNLLTDAEKKIAADIAMDAGATFLKTNTGWNGGATVADVKLLKDITRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
RVGIKASGGIRTLNQALDLILAGATRLGTSRGIDLIHQRDNPEKVE
HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA