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The map label for this gene is ydcM [C]

Identifier: 17231478

GI number: 17231478

Start: 4801437

End: 4802645

Strand: Reverse

Name: ydcM [C]

Synonym: all3986

Alternate gene names: 17231478

Gene position: 4802645-4801437 (Counterclockwise)

Preceding gene: 17231479

Following gene: 17231477

Centisome position: 74.88

GC content: 46.48

Gene sequence:

>1209_bases
ATGCTAGTATTTGAGACAAAACTTGAAGGAACAAACGAGCAGTATCAATTGCTGGATGAGGCGATTAAAACTGCTCGTTT
TGTCCGCAATGCTTGCCTCCGGTACTGGATGGACAACCAAAACATCGGCAGGTATGATTTGAGTGCTTATTGCGCTGTCC
TTGCTGCCAATGAAAACTTTCCGTTCGTTGCCAAACTCAACTCTATGGCTCGACAAGCTTCTGCTGAAAGAGCGTGGAGT
GCAATTGCTCGGTTTTTTGACAATTGCAAGCAAAACAAAACCGGGAAGAAAGGTTATCCACGCTTTAAAAAAGAACAGAC
GCATGGGAGTGTTGAGTATAAAACTAGCGGCTGGAAGCTTAGTAGTGACCGTCGTTATGTCACTTTTAGCGACGGATTTA
AAGCAGGAACTTTCAAACTCTGGGGAACTCGTGACTTGCATTTCTACCAGTTGAAACAGTTCAAGAGGGTGCGGGTTGTG
CGTCGTGCCGATGGGTACTACGCGCAGTTTTGCATTGACCAAGAGCGAGTAGAAAGGCGAGAACCAACGCTTAAAACTAT
TGGGCTGGATGTGGGATTGAACCATTTCTTGACCGATAGCGAAGGCAATACAGTTGAGAACCCTAGACACTTGCGTAAAA
GCGAAAAGTCTCTCAAGAGATTGCAACGCAGATTGTCTAAAACCAAGAAGGGTTCTAACAACAGAGTCAAGGCAAGAAAT
CGCTTGAGTAGAAAACACCTTAAAGTAAGTAGGCAGCGTAAAGACTTCGCCGTAAAGTTGGCGAGGTGCGTAGTCCAGTC
TAGCGACTTGGTAGCCTATGAGGATTTGCAGGTGCGGAACATGGTCAGGAATAGACATCTTGCCAAGTCGATTAGTGATG
CAGCGTGGACGCAGTTTCGGCAATGGGTTGAGTATTTCGGCAAAGTGTTTGGTGTAGTGACTGTTGCAGTCCCACCCCAT
CACACTTCGCAGAATTGTTCCAACTGTGGCGAAGTAGTGAAAAAGTCGCTGAGTACAAGAACTCATGCTTGCCCTCACTG
TGGACATATTCAAGACAGGGATTGGAACGCTGCACGGAACATACTTGAACTAGGACTACGTACTGTGGGACACACAGGAT
CTCAAGTCTCTGGAGATATCGACCTCTGTTTGGGTGAGGTAACTCCTCCAAATAAGTCGAGTCGTGGAAAGAGAAAGCCC
AAGAAGTGA

Upstream 100 bases:

>100_bases
AGCGTAAAGCCCCCGTATTTTTAATCGGGGGATATAAGCGAATGACCGAATTTATTCGGTCGTAACATGGTATAATTACG
TCAGAGAGTTTGACGTAAAA

Downstream 100 bases:

>100_bases
TTCTTGGAATCCCCCGTTTTCTAAACGGGGGAGGATGTCAACCTATCGCCAAGCATTTGCAGGCATCAGCTCCCGTTTTG
AAGCACCCTATGGACATCGC

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MLVFETKLEGTNEQYQLLDEAIKTARFVRNACLRYWMDNQNIGRYDLSAYCAVLAANENFPFVAKLNSMARQASAERAWS
AIARFFDNCKQNKTGKKGYPRFKKEQTHGSVEYKTSGWKLSSDRRYVTFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVV
RRADGYYAQFCIDQERVERREPTLKTIGLDVGLNHFLTDSEGNTVENPRHLRKSEKSLKRLQRRLSKTKKGSNNRVKARN
RLSRKHLKVSRQRKDFAVKLARCVVQSSDLVAYEDLQVRNMVRNRHLAKSISDAAWTQFRQWVEYFGKVFGVVTVAVPPH
HTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDRDWNAARNILELGLRTVGHTGSQVSGDIDLCLGEVTPPNKSSRGKRKP
KK

Sequences:

>Translated_402_residues
MLVFETKLEGTNEQYQLLDEAIKTARFVRNACLRYWMDNQNIGRYDLSAYCAVLAANENFPFVAKLNSMARQASAERAWS
AIARFFDNCKQNKTGKKGYPRFKKEQTHGSVEYKTSGWKLSSDRRYVTFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVV
RRADGYYAQFCIDQERVERREPTLKTIGLDVGLNHFLTDSEGNTVENPRHLRKSEKSLKRLQRRLSKTKKGSNNRVKARN
RLSRKHLKVSRQRKDFAVKLARCVVQSSDLVAYEDLQVRNMVRNRHLAKSISDAAWTQFRQWVEYFGKVFGVVTVAVPPH
HTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDRDWNAARNILELGLRTVGHTGSQVSGDIDLCLGEVTPPNKSSRGKRKP
KK
>Mature_402_residues
MLVFETKLEGTNEQYQLLDEAIKTARFVRNACLRYWMDNQNIGRYDLSAYCAVLAANENFPFVAKLNSMARQASAERAWS
AIARFFDNCKQNKTGKKGYPRFKKEQTHGSVEYKTSGWKLSSDRRYVTFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVV
RRADGYYAQFCIDQERVERREPTLKTIGLDVGLNHFLTDSEGNTVENPRHLRKSEKSLKRLQRRLSKTKKGSNNRVKARN
RLSRKHLKVSRQRKDFAVKLARCVVQSSDLVAYEDLQVRNMVRNRHLAKSISDAAWTQFRQWVEYFGKVFGVVTVAVPPH
HTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDRDWNAARNILELGLRTVGHTGSQVSGDIDLCLGEVTPPNKSSRGKRKP
KK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=286, Percent_Identity=30.0699300699301, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46283; Mature: 46283

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS00028 ZINC_FINGER_C2H2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFETKLEGTNEQYQLLDEAIKTARFVRNACLRYWMDNQNIGRYDLSAYCAVLAANENF
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEECCCCC
PFVAKLNSMARQASAERAWSAIARFFDNCKQNKTGKKGYPRFKKEQTHGSVEYKTSGWKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEECCCEEE
SSDRRYVTFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRRADGYYAQFCIDQERVERR
CCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHC
EPTLKTIGLDVGLNHFLTDSEGNTVENPRHLRKSEKSLKRLQRRLSKTKKGSNNRVKARN
CCCHHEEEHHHCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
RLSRKHLKVSRQRKDFAVKLARCVVQSSDLVAYEDLQVRNMVRNRHLAKSISDAAWTQFR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWVEYFGKVFGVVTVAVPPHHTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDRDWNAARN
HHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ILELGLRTVGHTGSQVSGDIDLCLGEVTPPNKSSRGKRKPKK
HHHHHHHHHCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLVFETKLEGTNEQYQLLDEAIKTARFVRNACLRYWMDNQNIGRYDLSAYCAVLAANENF
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEECCCCC
PFVAKLNSMARQASAERAWSAIARFFDNCKQNKTGKKGYPRFKKEQTHGSVEYKTSGWKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEECCCEEE
SSDRRYVTFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRRADGYYAQFCIDQERVERR
CCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHC
EPTLKTIGLDVGLNHFLTDSEGNTVENPRHLRKSEKSLKRLQRRLSKTKKGSNNRVKARN
CCCHHEEEHHHCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
RLSRKHLKVSRQRKDFAVKLARCVVQSSDLVAYEDLQVRNMVRNRHLAKSISDAAWTQFR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWVEYFGKVFGVVTVAVPPHHTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDRDWNAARN
HHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ILELGLRTVGHTGSQVSGDIDLCLGEVTPPNKSSRGKRKPKK
HHHHHHHHHCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]