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The map label for this gene is rbcR [H]

Identifier: 17231445

GI number: 17231445

Start: 4771271

End: 4772284

Strand: Reverse

Name: rbcR [H]

Synonym: all3953

Alternate gene names: 17231445

Gene position: 4772284-4771271 (Counterclockwise)

Preceding gene: 17231454

Following gene: 17231443

Centisome position: 74.41

GC content: 43.79

Gene sequence:

>1014_bases
ATGTCTGACCTTCCTTTCACTTTAGATCAGTTACGCATTCTCAAAGCGATCGCCGTAGAAGGGAGCTTCAAACGCGCCGC
TGATAGTCTTTATGTCTCCCAACCTGCCGTGAGTTTGCAAGTGCAGAATTTAGAACGGCAGTTGGATGTCCCTTTATTTG
ACCGTGGCGGCCGTCGCGCACAATTAACCGAAGCGGGACATCTACTATTGAGTTACGGTGAAAAAATCCTCAGTTTGTGC
CAAGAAACTTGCCGTGCTATTGAGGATTTACAAAATCTCCAAGGAGGTACTTTAATTGTTGGTGCTTCTCAAACCACTGG
AACATACCTTCTGCCCAAAATGATTGGGATGTTCCGGCAGAAGTACCCTGATGTGGCAGTACAACTGCACGTCCATTCGA
CTCGGCGCACTGCTTGGAGTGTGGCTAACGGACAAGTGGATTTGGCAATTATCGGAGGAGAAATTCCTGGGGAACTAACA
GAATCTTTGGAAATCATTCCCTATGCCGAAGATGAACTAGCCCTCATTCTTCCAGTGTTTCACCCCTTCACCAAATTGGA
CACCATTCAAAAAGAAGATTTATACAAATTACAATTCATTACTTTAGATTCTCAGTCAACAATACGCAAAGTTATCGATC
AAGTCCTATCTCGCAGTGAGATTGATACTAGGCGGTTTAAGATTGAAATGGAGTTAAATTCCATTGAAGCAATTAAAAAT
GCTGTGCAGTCGGGTTTAGGTGCAGCTTTTGTTTCCACTAGTGCGATCGCTAAAGAATTACAGATGGGTGTACTCCACTG
CACCCCCATTGACGGTGTAGTCATTAAACGGACACTGTGGCTAATTTTCAATCCTAATCGTTACAGATCCAAAGCAGCAG
AAGCTTTTAGCCAAGAGATATTACCACAGTTCGCTACTCCTGACTGGAATCAAGATGTGTTAAAACTGGCGCAAAAAAAA
CTAGTGGTAAATGTACTAGATGCAGCCATTCCCAACACTTCCGATGATGGCTAA

Upstream 100 bases:

>100_bases
TGGGTATTTTATTCGCGCCATCGTGTACTAATAGTTGCAAAGCTATAAAACGTGATTTATTGCTAACGTTGCTCCTTTCA
AAGTTTGTGGGTTGAGCCTT

Downstream 100 bases:

>100_bases
CATTTGGTTCTTAGTGAGCCAAAGTAATCTTCTCCTCAACAGAAATGCTAGCGCTAAGGGATTTTTCCTTGTTGGCGCTA
GCTTATTCTACGAGAACACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSDLPFTLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAGHLLLSYGEKILSLC
QETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELT
ESLEIIPYAEDELALILPVFHPFTKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKN
AVQSGLGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAFSQEILPQFATPDWNQDVLKLAQKK
LVVNVLDAAIPNTSDDG

Sequences:

>Translated_337_residues
MSDLPFTLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAGHLLLSYGEKILSLC
QETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELT
ESLEIIPYAEDELALILPVFHPFTKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKN
AVQSGLGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAFSQEILPQFATPDWNQDVLKLAQKK
LVVNVLDAAIPNTSDDG
>Mature_336_residues
SDLPFTLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAGHLLLSYGEKILSLCQ
ETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTE
SLEIIPYAEDELALILPVFHPFTKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNA
VQSGLGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAFSQEILPQFATPDWNQDVLKLAQKKL
VVNVLDAAIPNTSDDG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=32.7645051194539, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI157672245, Length=301, Percent_Identity=28.9036544850498, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=26.7857142857143, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=28.0936454849498, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=26.2975778546713, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=27.1317829457364, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788748, Length=302, Percent_Identity=29.4701986754967, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=27.3092369477912, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=27.9527559055118, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=29.9492385786802, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788626, Length=256, Percent_Identity=28.90625, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=26.4822134387352, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=143, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=27.8884462151394, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1789173, Length=307, Percent_Identity=29.3159609120521, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789204, Length=313, Percent_Identity=23.6421725239617, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=276, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082024, Length=290, Percent_Identity=25.8620689655172, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=30.1369863013699, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1789492, Length=72, Percent_Identity=45.8333333333333, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787949, Length=141, Percent_Identity=31.9148936170213, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37403; Mature: 37271

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLPFTLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRA
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCEEEHHHHHHHCCCCCCCCCCCEE
QLTEAGHLLLSYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQ
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
KYPDVAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVF
CCCCEEEEEEEECCCHHHEEECCCEEEEEEECCCCCCHHHCCEEEEECCCCCEEEEEEHH
HPFTKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKN
CCHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHH
AVQSGLGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAFSQEI
HHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
LPQFATPDWNQDVLKLAQKKLVVNVLDAAIPNTSDDG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDLPFTLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRA
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCEEEHHHHHHHCCCCCCCCCCCEE
QLTEAGHLLLSYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQ
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
KYPDVAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVF
CCCCEEEEEEEECCCHHHEEECCCEEEEEEECCCCCCHHHCCEEEEECCCCCEEEEEEHH
HPFTKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKN
CCHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHH
AVQSGLGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAFSQEI
HHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
LPQFATPDWNQDVLKLAQKKLVVNVLDAAIPNTSDDG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA