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The map label for this gene is dppA [C]

Identifier: 17231376

GI number: 17231376

Start: 4684652

End: 4686439

Strand: Direct

Name: dppA [C]

Synonym: alr3884

Alternate gene names: 17231376

Gene position: 4684652-4686439 (Clockwise)

Preceding gene: 17231375

Following gene: 17231377

Centisome position: 73.04

GC content: 40.55

Gene sequence:

>1788_bases
ATGCCATATACAAATAATCTCATTTCCTTAATTAAGCGTTTTTGGATACTCATAATTCTGGCTGCATTTACAGCAGTTAC
AGTTGCAGCTTGTAACCCATCTAACTTTAGAAGCTCGGCTGCTCAGATACCGCAATTAGTAACTAGTATTCTCAGTGATC
CTAAAACATTCAACTATCCTTTAAGTTCGGAATCACCTAATGTTTTTGGGTTGATTTATGAGGGGTTAATTAGCGAAAAT
TATGATACTGGTGAAGTCGAGCCAGCTTTAGCAGAATCTTGGACGATTTCTGAAGATAAATTAAAAATTGTTTTTACTCT
TCGTGAGGGTTTAAAGTGGTCGGATGGGCAACCACTAACTGTAGATGATGTTGTATTTACTTACAATGACATTTACTTTA
ACGAAGCCATTCCTACAGATATCAGAGATATTATGAGGATTGGTGAAAGTCGGAAATTGCCAACTGTGAGAAAAGTTGAT
ACTCGTCGAGTTGAGTTTGCTGTTCCCGAACCGTTCGCGCCTTTTTTACGCAGTGCGACAGGTGCGGCAATCTTACCAGC
CCATGCACTACGAGAATCTATAAAAACCAAAGATAGTGAGGGTAAGCCCACGTTTTTACAAAAATGGGGGGTAGATACAC
CGCCAGACCAAATTGTCGTGAATGGTTTGTACAAATTGGAGCGTTATGACACCAGTGAACGTGTAGTTTTCCGACGCAAT
CCTTACTATTGGCGTAAAGGCCCAAAAGGTGAATCTCAACCTTATATTGAACGATTGGTCTGGCAAATTGTCGAATCAAC
AGATACCTCGTTACTACAGTTTCGTTCTGGTGGTTTGGATAGTATTGGTGTTTCCCCAGACTACTTTTCTCTGCTGAAGG
TGCAAGAAAAGCAAGGTAATTTTAAGATATATAATGGCGGCCCGGCGGCTGGGACAACTTTTATATTGTTTAACTTGAAT
AAGGGTAAAAGAGACGGTAAACCATTAGTTGATCCGGTAAAATCCCGTTGGTTTAATACAGTAGAGTTTCGTCAAGCTGT
GGCTTATGCAGTTGACCGCCAAACGATGATTAATAATATTTATCGGGGTTTGGGTCAAACGCAAAATTCCCCAATTTCTG
TACAAAGTCCTTATTATCTGTCGCCCGAAGAAGGGTTAAAGGTTTACGATTACAATTTAGAAAAAGCCAAGCAATTGTTA
TTGAAAACGGGCTTTAAATATAATGCTCAAAATCAGTTATTAGACTCTGAAGGTAATCGAGTCCGCTTTACACTGCTGAC
GAATGCTGGTAACAAAATTCGTGAGGCAATGGGGTCACAGATTAAACAAGATTTGAGCAAAATCGGCATACAGGTAGATT
TTACACCCTTGGCATGGAATACTTATACAGACAAGCTGGCGAATACTTTAGATTGGGAAGCTTCCATGCTGGGTTTGACT
GGCGGTTTAGAACCAAATGATGGTGCTAATGTCTGGAATCCTGAAGGCGGATTACATATGTTTAACCAAAAGCCCCAAGC
AGGACAAAAGCCCATTACAGGTTGGGAAGTAGCACCGTGGGAAGCGAAAATCGGTCAACTCTACATTCAAGGTGCTAGAG
AGTTAGACGAAACCAAACGTAAAGCAATCTATGCCGAAACCCAAAAAATCACTCAAGAGAACTTACCATTCATTTACTTG
GTAAATCCATATTCATTATCCGCAGTACGCGATCGCTTTGCAGGTATTCGCTTCTCAGCACTAGGTGGCGCATTCTGGAA
CTTGTACGAAATCAAAATAGTTAAGTAG

Upstream 100 bases:

>100_bases
TTCTGATGAGATTAGTTAACTCAAAATTGGAGGATGGAGAATGCAGGCAAAAATGCAACATAGCTAAAATATTAAATCAA
CTATTAGTGCATCTAAATTT

Downstream 100 bases:

>100_bases
GTAATTGGTAATTGGTAAGCAAGAAAACTTTTACCCATTACCCATCACCCATTACCCATCACCACATTACCCAAAATTAC
CGTGACTCAACCTGAAGCTT

Product: periplasmic oligopeptide-binding protein of oligopeptide ABC transporter

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 595; Mature: 594

Protein sequence:

>595_residues
MPYTNNLISLIKRFWILIILAAFTAVTVAACNPSNFRSSAAQIPQLVTSILSDPKTFNYPLSSESPNVFGLIYEGLISEN
YDTGEVEPALAESWTISEDKLKIVFTLREGLKWSDGQPLTVDDVVFTYNDIYFNEAIPTDIRDIMRIGESRKLPTVRKVD
TRRVEFAVPEPFAPFLRSATGAAILPAHALRESIKTKDSEGKPTFLQKWGVDTPPDQIVVNGLYKLERYDTSERVVFRRN
PYYWRKGPKGESQPYIERLVWQIVESTDTSLLQFRSGGLDSIGVSPDYFSLLKVQEKQGNFKIYNGGPAAGTTFILFNLN
KGKRDGKPLVDPVKSRWFNTVEFRQAVAYAVDRQTMINNIYRGLGQTQNSPISVQSPYYLSPEEGLKVYDYNLEKAKQLL
LKTGFKYNAQNQLLDSEGNRVRFTLLTNAGNKIREAMGSQIKQDLSKIGIQVDFTPLAWNTYTDKLANTLDWEASMLGLT
GGLEPNDGANVWNPEGGLHMFNQKPQAGQKPITGWEVAPWEAKIGQLYIQGARELDETKRKAIYAETQKITQENLPFIYL
VNPYSLSAVRDRFAGIRFSALGGAFWNLYEIKIVK

Sequences:

>Translated_595_residues
MPYTNNLISLIKRFWILIILAAFTAVTVAACNPSNFRSSAAQIPQLVTSILSDPKTFNYPLSSESPNVFGLIYEGLISEN
YDTGEVEPALAESWTISEDKLKIVFTLREGLKWSDGQPLTVDDVVFTYNDIYFNEAIPTDIRDIMRIGESRKLPTVRKVD
TRRVEFAVPEPFAPFLRSATGAAILPAHALRESIKTKDSEGKPTFLQKWGVDTPPDQIVVNGLYKLERYDTSERVVFRRN
PYYWRKGPKGESQPYIERLVWQIVESTDTSLLQFRSGGLDSIGVSPDYFSLLKVQEKQGNFKIYNGGPAAGTTFILFNLN
KGKRDGKPLVDPVKSRWFNTVEFRQAVAYAVDRQTMINNIYRGLGQTQNSPISVQSPYYLSPEEGLKVYDYNLEKAKQLL
LKTGFKYNAQNQLLDSEGNRVRFTLLTNAGNKIREAMGSQIKQDLSKIGIQVDFTPLAWNTYTDKLANTLDWEASMLGLT
GGLEPNDGANVWNPEGGLHMFNQKPQAGQKPITGWEVAPWEAKIGQLYIQGARELDETKRKAIYAETQKITQENLPFIYL
VNPYSLSAVRDRFAGIRFSALGGAFWNLYEIKIVK
>Mature_594_residues
PYTNNLISLIKRFWILIILAAFTAVTVAACNPSNFRSSAAQIPQLVTSILSDPKTFNYPLSSESPNVFGLIYEGLISENY
DTGEVEPALAESWTISEDKLKIVFTLREGLKWSDGQPLTVDDVVFTYNDIYFNEAIPTDIRDIMRIGESRKLPTVRKVDT
RRVEFAVPEPFAPFLRSATGAAILPAHALRESIKTKDSEGKPTFLQKWGVDTPPDQIVVNGLYKLERYDTSERVVFRRNP
YYWRKGPKGESQPYIERLVWQIVESTDTSLLQFRSGGLDSIGVSPDYFSLLKVQEKQGNFKIYNGGPAAGTTFILFNLNK
GKRDGKPLVDPVKSRWFNTVEFRQAVAYAVDRQTMINNIYRGLGQTQNSPISVQSPYYLSPEEGLKVYDYNLEKAKQLLL
KTGFKYNAQNQLLDSEGNRVRFTLLTNAGNKIREAMGSQIKQDLSKIGIQVDFTPLAWNTYTDKLANTLDWEASMLGLTG
GLEPNDGANVWNPEGGLHMFNQKPQAGQKPITGWEVAPWEAKIGQLYIQGARELDETKRKAIYAETQKITQENLPFIYLV
NPYSLSAVRDRFAGIRFSALGGAFWNLYEIKIVK

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=590, Percent_Identity=24.5762711864407, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787762, Length=590, Percent_Identity=23.5593220338983, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789397, Length=588, Percent_Identity=23.6394557823129, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789887, Length=398, Percent_Identity=24.6231155778894, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081878, Length=474, Percent_Identity=23.8396624472574, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787052, Length=444, Percent_Identity=20.9459459459459, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 67166; Mature: 67035

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYTNNLISLIKRFWILIILAAFTAVTVAACNPSNFRSSAAQIPQLVTSILSDPKTFNYP
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCEECCC
LSSESPNVFGLIYEGLISENYDTGEVEPALAESWTISEDKLKIVFTLREGLKWSDGQPLT
CCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHCCEEECCCCEEEEEEEECCCCCCCCCCCE
VDDVVFTYNDIYFNEAIPTDIRDIMRIGESRKLPTVRKVDTRRVEFAVPEPFAPFLRSAT
EHHEEEEECEEEECCCCCHHHHHHHHCCCCCCCCCHHCCCCCEEEEECCCCHHHHHHCCC
GAAILPAHALRESIKTKDSEGKPTFLQKWGVDTPPDQIVVNGLYKLERYDTSERVVFRRN
CCEEHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECC
PYYWRKGPKGESQPYIERLVWQIVESTDTSLLQFRSGGLDSIGVSPDYFSLLKVQEKQGN
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC
FKIYNGGPAAGTTFILFNLNKGKRDGKPLVDPVKSRWFNTVEFRQAVAYAVDRQTMINNI
EEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YRGLGQTQNSPISVQSPYYLSPEEGLKVYDYNLEKAKQLLLKTGFKYNAQNQLLDSEGNR
HHHCCCCCCCCEEECCCEEECCCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHCCCCCCE
VRFTLLTNAGNKIREAMGSQIKQDLSKIGIQVDFTPLAWNTYTDKLANTLDWEASMLGLT
EEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHCCCCCHHEEEEC
GGLEPNDGANVWNPEGGLHMFNQKPQAGQKPITGWEVAPWEAKIGQLYIQGARELDETKR
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAIYAETQKITQENLPFIYLVNPYSLSAVRDRFAGIRFSALGGAFWNLYEIKIVK
HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEHHCCCEEEEEEEEEEC
>Mature Secondary Structure 
PYTNNLISLIKRFWILIILAAFTAVTVAACNPSNFRSSAAQIPQLVTSILSDPKTFNYP
CCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCEECCC
LSSESPNVFGLIYEGLISENYDTGEVEPALAESWTISEDKLKIVFTLREGLKWSDGQPLT
CCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHCCEEECCCCEEEEEEEECCCCCCCCCCCE
VDDVVFTYNDIYFNEAIPTDIRDIMRIGESRKLPTVRKVDTRRVEFAVPEPFAPFLRSAT
EHHEEEEECEEEECCCCCHHHHHHHHCCCCCCCCCHHCCCCCEEEEECCCCHHHHHHCCC
GAAILPAHALRESIKTKDSEGKPTFLQKWGVDTPPDQIVVNGLYKLERYDTSERVVFRRN
CCEEHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECC
PYYWRKGPKGESQPYIERLVWQIVESTDTSLLQFRSGGLDSIGVSPDYFSLLKVQEKQGN
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC
FKIYNGGPAAGTTFILFNLNKGKRDGKPLVDPVKSRWFNTVEFRQAVAYAVDRQTMINNI
EEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YRGLGQTQNSPISVQSPYYLSPEEGLKVYDYNLEKAKQLLLKTGFKYNAQNQLLDSEGNR
HHHCCCCCCCCEEECCCEEECCCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHCCCCCCE
VRFTLLTNAGNKIREAMGSQIKQDLSKIGIQVDFTPLAWNTYTDKLANTLDWEASMLGLT
EEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHCCCCCHHEEEEC
GGLEPNDGANVWNPEGGLHMFNQKPQAGQKPITGWEVAPWEAKIGQLYIQGARELDETKR
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAIYAETQKITQENLPFIYLVNPYSLSAVRDRFAGIRFSALGGAFWNLYEIKIVK
HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEHHCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]