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The map label for this gene is radA [H]

Identifier: 17231315

GI number: 17231315

Start: 4621554

End: 4623077

Strand: Direct

Name: radA [H]

Synonym: alr3823

Alternate gene names: 17231315

Gene position: 4621554-4623077 (Clockwise)

Preceding gene: 17231310

Following gene: 17231316

Centisome position: 72.06

GC content: 45.54

Gene sequence:

>1524_bases
ATGGCAAAGCCCAAAACTTTTTACATTTGTAACGAATGTGGAGCAGAATCTCCCCAATGGTTTGGTAAGTGTCCAGCTTG
TGGTACTTACAATTCCTTAGAAGAACAGATTACCATTCAATCTTCCGTAGATGTACCTAAGGGGGGAGTTAGTGGTTGGC
ACGCTTCTCAGAATAATGGCAAAGCACCTGTTAAGCCGCCAAAAGCACGAGCTTCTTTAACATTTGACCAAATTACCGAT
CGCCAAATTGCACGTTGGGAGTCTGGCTATGGGGAACTGGATCGGGTACTTGGTGGTGGTGTGGTTCCGGGTTCGATGGT
GTTGATTGGTGGCGATCCTGGTATCGGTAAATCTACTTTATTACTACAAGTTTCAAATCAATTGGCGCAGAGATATCGGA
TTCTCTATGTAACTGGCGAAGAATCTGGGCAACAGGTAAAGTTAAGAGCTTCTCGCTTAGGTGTGGCAAAATGCCTAAGT
GTTGTAGGAGATGATCAGCAAGAAGAGTCAGAACAGACGTCTCCAGTATCAATAGCTGAAAGTGTAGGTGCAGATTTATA
TGTTCTTCCAGAGACAGATTTAGAAGAAATATTACGAGAGGTGGATTCTCTCAAGCCCAATGTGGCAGTGATTGATAGTA
TTCAAACCGTGTTTTTTCCCGCCCTGACCTCTGCGCCTGGTTCAGTCGCCCAAGTCAGGGAATGTACAGCCGCCTTAATG
AAAGTGGCAAAACACGAAGACATCACCATGTTAATTGTCGGACACGTCACCAAAGAAGGTGCGATCGCCGGGCCAAAAGT
TTTAGAACACCTAGTAGATACAGTACTCTATTTTGAAGGCGATCGCTTTGCTTCTCATCGGTTATTACGTACAGTTAAAA
ACCGCTTCGGTGCAACTCACGAAATCGGTATCTTTGAAATGGTGGCGAATGGATTGCGAGAAGTACCTAATCCCAGTGAG
CTATTTCTAGGTAATCGTGATGATCCTGCTCCTGGTACAGCCATTGTTGTGGCTTGTGAAGGTACACGCCCTATTGTCGT
AGAATTACAAGCCTTAGTCAGTCCCACCAGCTACCCCTCTCCCCGCCGTGCAGGTACAGGTATAGACTATAACCGATTAG
TCCAAATTCTCGCTGTGTTAGAAAAACGCGTGGGAATCCCCATGTCCAAATTAGATTCTTACGTCGCTTCGGCTGGAGGA
TTAAACGTAGAAGAACCAGCCGTAGATTTAGGGATAGCCATTGCTATCGTTGCCAGTTTCCGCGATCGCATTGTTGATCC
CGGTACAGTCTTGATTGGGGAAGTCGGCTTGGGTGGACAAGTGCGATCGGTTTCCCAGATGGAACTCCGATTAAAAGAAG
CAGCTAAACTGGGATTCAAGAAAGCGATCGTTCCTAAAGGTCAAAAATTTCCCGACTTTGACATAGAAATTATCCCAGTT
GCCAAAGTCATAGATGCAATTATTGCCGCCATCCCTCACCAAGAACTAACAGAAGAGGACTTCAACCCAGATGAGGATGA
ATAA

Upstream 100 bases:

>100_bases
TGATTTGGAAAATGCTCTAACTCTTGCTATTAATCGGATTTTCAATTTGAGCAATACTTAAGGAAAAATTAAGATATTTC
ATATTAGTTAACATTTAATA

Downstream 100 bases:

>100_bases
GTAACAGGGGACAGGTGACAAAATTTCCTTTACACCCTTACTTCATTAGCAGCGCAACTACGAGCAGCAGGTATTGAACC
ACAAGAGTAGACTTTTGACT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MAKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNGKAPVKPPKARASLTFDQITD
RQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKCLS
VVGDDQQEESEQTSPVSIAESVGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
KVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVANGLREVPNPSE
LFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGG
LNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKKAIVPKGQKFPDFDIEIIPV
AKVIDAIIAAIPHQELTEEDFNPDEDE

Sequences:

>Translated_507_residues
MAKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNGKAPVKPPKARASLTFDQITD
RQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKCLS
VVGDDQQEESEQTSPVSIAESVGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
KVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVANGLREVPNPSE
LFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGG
LNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKKAIVPKGQKFPDFDIEIIPV
AKVIDAIIAAIPHQELTEEDFNPDEDE
>Mature_506_residues
AKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNGKAPVKPPKARASLTFDQITDR
QIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKCLSV
VGDDQQEESEQTSPVSIAESVGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALMK
VAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVANGLREVPNPSEL
FLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGGL
NVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKKAIVPKGQKFPDFDIEIIPVA
KVIDAIIAAIPHQELTEEDFNPDEDE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=491, Percent_Identity=43.1771894093686, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 54514; Mature: 54383

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNG
CCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCCCC
KAPVKPPKARASLTFDQITDRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTL
CCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEE
LLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKCLSVVGDDQQEESEQTSPVSIAE
EEHHHHHHHCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHH
SVGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
HCCCCEEEECCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATH
HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
EIGIFEMVANGLREVPNPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPS
CCHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCEEEEEECCCCCEEEEHHHHHCCCCCCC
PRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGGLNVEEPAVDLGIAIAIVASF
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
RDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKKAIVPKGQKFPDFDIEIIPV
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCEEEEEH
AKVIDAIIAAIPHQELTEEDFNPDEDE
HHHHHHHHHHCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNG
CCCCEEEEECCCCCCCCHHCCCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCCCC
KAPVKPPKARASLTFDQITDRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTL
CCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEE
LLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKCLSVVGDDQQEESEQTSPVSIAE
EEHHHHHHHCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHH
SVGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
HCCCCEEEECCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATH
HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
EIGIFEMVANGLREVPNPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPS
CCHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCEEEEEECCCCCEEEEHHHHHCCCCCCC
PRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGGLNVEEPAVDLGIAIAIVASF
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
RDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKKAIVPKGQKFPDFDIEIIPV
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCEEEEEH
AKVIDAIIAAIPHQELTEEDFNPDEDE
HHHHHHHHHHCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]