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The map label for this gene is 17231299

Identifier: 17231299

GI number: 17231299

Start: 4599544

End: 4601358

Strand: Direct

Name: 17231299

Synonym: alr3807

Alternate gene names: NA

Gene position: 4599544-4601358 (Clockwise)

Preceding gene: 17231298

Following gene: 17231300

Centisome position: 71.71

GC content: 38.51

Gene sequence:

>1815_bases
ATGAGTTCTTCCAAAAAGCCCTCACAGCAGCCCTCGCAGATAAATCTTAGTGCAGAAATTGGGCAATTTATCAGCCTAAA
TCAAGAAGCTTTTGCTGAGTTACTGACTTTCATCGACTTTGCAGAAAAGTTTACCCTTGGTTTGGTGGAAGTTAACTTTC
CTCCCGATGTGGATTTATTAATTGCGGCGTTACAAAACAACCCGGACTGTGAGAATATTCAATTTTTTATTCTTAAATGT
GTCGATGCTAATCTGCGGTTTCTGCGAGATGAAATTATTAAAAGATTATCTGAGATTGAATTAGAATCTAATAAAAAGTT
AGTCTTGATTGTCAGAGGTTTAGAAAACGCCATTGGGGTGTTCGGTGAATATCCCCCAGTATTACAAGACTTAAACTTTG
TGCGGGATGCGTATAAAAGAACTGTCCCTCATCCCATATTATTTATTCTGCCAGATTATGCCATCACTCGCCTAGCTAAA
TTCGCACCAGATTTTTGGGCTTGGCGTTCAGGAATATTTCGTTTTAAAACACCAGCAATAACAAAAGAAAATGCTATTAA
TCAGGTTAAAAATAGCGAGATATTAGACAGGATAGAGCCGCCGGAGAAGCAAGAACGCATCGATTTATTACACCGCCTGT
TAATGGAAGAAAAACCAACTGGACAACAGGTAACAGATGGTAATCTCCGCAGCTATAGTAATATTTTACATCAACTTGGA
CAGGCTTATTTAAGTCATATAAAACCAGAAAAAGCTAGGGAATATTTAGAAGAAGCAGAAAGAATTTCTGAAAATTTACA
AGATGAGTTATTTCAAGCAGAAGTTATTAACACTTTAGGCGATACCTACTCTCTACAAAGGCAATTTAATCTAGGAATCA
AGTATTATGAGAAATCATTACTAATTGCTAGACGCTTAGAGAATCGCCTTAGTGAAATTAATGCTTTATTTAAACTAGGT
AATGCTTATTTAGATTTGAGGCAATTTTCACAAGCTGCTAAATTTTATCAGCAGTGTTTAGACATTGAGCAAGAGATAGG
CGATCGCTATAGCCAAGCAAGCACTTACCACGAATTGGGAAGAGTCGCCCAAAATTTACGGGAATGGGAACAAGCCAAAA
CCTATTATCAACAAGCTTTAGATATCACAATCGAATTTGGCGATCGCTATAACCAAGCAAGCACTTACCACCAGTTGGGA
ATGGTAGCCCAAAAATTAAGGAAATGGGAACAAGCCAAAACCTATTATCAACAAGCTTTGGATATCACAATCGAATTTGG
CGATCGCTATAACCAAGCCAGAATTTACCACCAGTTGGCAATCGTAGCCCAAAATTTACGAGAATGGCAACAAGCCAAAA
CCTATTATCAACAAGCTTTGGATCTCAAAATTGAATTTGGTGATCGCTATAACCAAGCAAGCACTTACCACCAGTTGGGA
ATGGTAGCCCAAAATTTACGGGAATGGGAACAAGCCAAAACCTATTATCAACAAGCTTTAGATATCACAATCGAATTTGG
CGATCGCTATAGCCAAGCAAGCACTTACCACCAGTTGGGAATAGTAGCCCAAAATTTAAGGGAATGGGAACAAGCCAAAA
CCTATTACCAACAAGCGTTGGATCTCAAAATTGAATTTGGCGATCGCTATAGCCAAGCCAGCACCTATGGACAATTAGGA
ACGCTTGCAGAAGCGCAGGAAAATTATGTAGAGGCGAGGCTGAATTTGCAGACAGCTTTAGAAATATACGTTGAGTATAA
AGATGAACATTGGGCAGGGATAGCAAGAAAAATTTTAGACGAATTACCAGAATGA

Upstream 100 bases:

>100_bases
AGCAAAGATGAAATTGGTCAATTGATGCTGTTTAACACTTCAGTTTTAGAATATAACGGCAATAAACGCTGGAATTACCC
CAATCCCGTGGTAAAACAAA

Downstream 100 bases:

>100_bases
TGGTGAGATGTAAAAGCAGTGGTGTGACAAGCCTAAAATTTAGGTTGGGTAGAGGCTTTGCGTAACCCAATACCCTGATA
TGGCTGTTGGCTGTTGACTG

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; Tetratricopeptide TPR_2 Repeat Protein; SARP Family Transcriptional Regulator; TPR Domain-Containing Protein; TPR Repeat Protein; Transcriptional Regulator SARP Family; NB-ARC Domain-Containing Protein; Diguanylate Cyclase/Serine/Threonine Protein Kinase; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Domain-Containing Protein; Regulatory Protein AfsR; NB-ARC Domain Protein; XRE Family Transcriptional Regulator; Glycosyl Transferase Family Protein; Tetratricopeptide Protein; Signal Transduction Histidine Kinase Lyts; LOW QUALITY PROTEIN Regulatory Protein AfsR; SLEI Family; Histidine Kinase; TPR Domain Family Protein; TPR Domain Protein; Diguanylate Cyclase; AfsR-Like Regulator; XRE Family Transcriptional Regulator With TPR Repeat Domain; TPR Repeat-Containing Adenylate/Guanylate Cyclase; Nb-Arc Domain Protein; Tetratricopeptide TPR-2 Repeat-Containing Protein; NTPase Containing TPR Repeat Domain; Signal Transduction Protein; Signal Transduction Histidine Kinase-Like Protein; Two-Component System Response Regulator; Sensory Transduction Histidine Kinase; ATPase Containing TPR Repeat Domain; O-Linked GlcNAc Transferase; Signal Transduction Histidine Kinase LytS; Transcriptional Regulator XRE Family; Transcriptional Activator Domain Containing Protein; PAS/PAC Sensor Protein; Fis Family Transcriptional Regulator; Transcriptional Activator Domain-Containing Protein

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MSSSKKPSQQPSQINLSAEIGQFISLNQEAFAELLTFIDFAEKFTLGLVEVNFPPDVDLLIAALQNNPDCENIQFFILKC
VDANLRFLRDEIIKRLSEIELESNKKLVLIVRGLENAIGVFGEYPPVLQDLNFVRDAYKRTVPHPILFILPDYAITRLAK
FAPDFWAWRSGIFRFKTPAITKENAINQVKNSEILDRIEPPEKQERIDLLHRLLMEEKPTGQQVTDGNLRSYSNILHQLG
QAYLSHIKPEKAREYLEEAERISENLQDELFQAEVINTLGDTYSLQRQFNLGIKYYEKSLLIARRLENRLSEINALFKLG
NAYLDLRQFSQAAKFYQQCLDIEQEIGDRYSQASTYHELGRVAQNLREWEQAKTYYQQALDITIEFGDRYNQASTYHQLG
MVAQKLRKWEQAKTYYQQALDITIEFGDRYNQARIYHQLAIVAQNLREWQQAKTYYQQALDLKIEFGDRYNQASTYHQLG
MVAQNLREWEQAKTYYQQALDITIEFGDRYSQASTYHQLGIVAQNLREWEQAKTYYQQALDLKIEFGDRYSQASTYGQLG
TLAEAQENYVEARLNLQTALEIYVEYKDEHWAGIARKILDELPE

Sequences:

>Translated_604_residues
MSSSKKPSQQPSQINLSAEIGQFISLNQEAFAELLTFIDFAEKFTLGLVEVNFPPDVDLLIAALQNNPDCENIQFFILKC
VDANLRFLRDEIIKRLSEIELESNKKLVLIVRGLENAIGVFGEYPPVLQDLNFVRDAYKRTVPHPILFILPDYAITRLAK
FAPDFWAWRSGIFRFKTPAITKENAINQVKNSEILDRIEPPEKQERIDLLHRLLMEEKPTGQQVTDGNLRSYSNILHQLG
QAYLSHIKPEKAREYLEEAERISENLQDELFQAEVINTLGDTYSLQRQFNLGIKYYEKSLLIARRLENRLSEINALFKLG
NAYLDLRQFSQAAKFYQQCLDIEQEIGDRYSQASTYHELGRVAQNLREWEQAKTYYQQALDITIEFGDRYNQASTYHQLG
MVAQKLRKWEQAKTYYQQALDITIEFGDRYNQARIYHQLAIVAQNLREWQQAKTYYQQALDLKIEFGDRYNQASTYHQLG
MVAQNLREWEQAKTYYQQALDITIEFGDRYSQASTYHQLGIVAQNLREWEQAKTYYQQALDLKIEFGDRYSQASTYGQLG
TLAEAQENYVEARLNLQTALEIYVEYKDEHWAGIARKILDELPE
>Mature_603_residues
SSSKKPSQQPSQINLSAEIGQFISLNQEAFAELLTFIDFAEKFTLGLVEVNFPPDVDLLIAALQNNPDCENIQFFILKCV
DANLRFLRDEIIKRLSEIELESNKKLVLIVRGLENAIGVFGEYPPVLQDLNFVRDAYKRTVPHPILFILPDYAITRLAKF
APDFWAWRSGIFRFKTPAITKENAINQVKNSEILDRIEPPEKQERIDLLHRLLMEEKPTGQQVTDGNLRSYSNILHQLGQ
AYLSHIKPEKAREYLEEAERISENLQDELFQAEVINTLGDTYSLQRQFNLGIKYYEKSLLIARRLENRLSEINALFKLGN
AYLDLRQFSQAAKFYQQCLDIEQEIGDRYSQASTYHELGRVAQNLREWEQAKTYYQQALDITIEFGDRYNQASTYHQLGM
VAQKLRKWEQAKTYYQQALDITIEFGDRYNQARIYHQLAIVAQNLREWQQAKTYYQQALDLKIEFGDRYNQASTYHQLGM
VAQNLREWEQAKTYYQQALDITIEFGDRYSQASTYHQLGIVAQNLREWEQAKTYYQQALDLKIEFGDRYSQASTYGQLGT
LAEAQENYVEARLNLQTALEIYVEYKDEHWAGIARKILDELPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI224028289, Length=360, Percent_Identity=28.0555555555556, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI224548927, Length=301, Percent_Identity=27.5747508305648, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI224548925, Length=301, Percent_Identity=27.5747508305648, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI164519122, Length=341, Percent_Identity=26.3929618768328, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI145386551, Length=345, Percent_Identity=24.3478260869565, Blast_Score=89, Evalue=2e-17,
Organism=Homo sapiens, GI32307148, Length=325, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI32307150, Length=325, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25147165, Length=318, Percent_Identity=23.5849056603774, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25147167, Length=328, Percent_Identity=22.8658536585366, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115532692, Length=315, Percent_Identity=23.4920634920635, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=315, Percent_Identity=23.4920634920635, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24660950, Length=337, Percent_Identity=26.7062314540059, Blast_Score=125, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24650658, Length=305, Percent_Identity=28.5245901639344, Blast_Score=119, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24638654, Length=245, Percent_Identity=24.4897959183673, Blast_Score=66, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21356809, Length=245, Percent_Identity=24.4897959183673, Blast_Score=66, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70541; Mature: 70410

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSKKPSQQPSQINLSAEIGQFISLNQEAFAELLTFIDFAEKFTLGLVEVNFPPDVDLL
CCCCCCCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHH
IAALQNNPDCENIQFFILKCVDANLRFLRDEIIKRLSEIELESNKKLVLIVRGLENAIGV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHH
FGEYPPVLQDLNFVRDAYKRTVPHPILFILPDYAITRLAKFAPDFWAWRSGIFRFKTPAI
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCEEECCCCC
TKENAINQVKNSEILDRIEPPEKQERIDLLHRLLMEEKPTGQQVTDGNLRSYSNILHQLG
CHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
QAYLSHIKPEKAREYLEEAERISENLQDELFQAEVINTLGDTYSLQRQFNLGIKYYEKSL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
LIARRLENRLSEINALFKLGNAYLDLRQFSQAAKFYQQCLDIEQEIGDRYSQASTYHELG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVAQNLREWEQAKTYYQQALDITIEFGDRYNQASTYHQLGMVAQKLRKWEQAKTYYQQAL
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DITIEFGDRYNQARIYHQLAIVAQNLREWQQAKTYYQQALDLKIEFGDRYNQASTYHQLG
HEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHH
MVAQNLREWEQAKTYYQQALDITIEFGDRYSQASTYHQLGIVAQNLREWEQAKTYYQQAL
HHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKIEFGDRYSQASTYGQLGTLAEAQENYVEARLNLQTALEIYVEYKDEHWAGIARKILD
HEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELPE
HCCC
>Mature Secondary Structure 
SSSKKPSQQPSQINLSAEIGQFISLNQEAFAELLTFIDFAEKFTLGLVEVNFPPDVDLL
CCCCCCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHH
IAALQNNPDCENIQFFILKCVDANLRFLRDEIIKRLSEIELESNKKLVLIVRGLENAIGV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHH
FGEYPPVLQDLNFVRDAYKRTVPHPILFILPDYAITRLAKFAPDFWAWRSGIFRFKTPAI
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCEEECCCCC
TKENAINQVKNSEILDRIEPPEKQERIDLLHRLLMEEKPTGQQVTDGNLRSYSNILHQLG
CHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
QAYLSHIKPEKAREYLEEAERISENLQDELFQAEVINTLGDTYSLQRQFNLGIKYYEKSL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
LIARRLENRLSEINALFKLGNAYLDLRQFSQAAKFYQQCLDIEQEIGDRYSQASTYHELG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVAQNLREWEQAKTYYQQALDITIEFGDRYNQASTYHQLGMVAQKLRKWEQAKTYYQQAL
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DITIEFGDRYNQARIYHQLAIVAQNLREWQQAKTYYQQALDLKIEFGDRYNQASTYHQLG
HEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHH
MVAQNLREWEQAKTYYQQALDITIEFGDRYSQASTYHQLGIVAQNLREWEQAKTYYQQAL
HHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKIEFGDRYSQASTYGQLGTLAEAQENYVEARLNLQTALEIYVEYKDEHWAGIARKILD
HEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELPE
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA