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The map label for this gene is 17231266

Identifier: 17231266

GI number: 17231266

Start: 4562760

End: 4563455

Strand: Direct

Name: 17231266

Synonym: alr3774

Alternate gene names: NA

Gene position: 4562760-4563455 (Clockwise)

Preceding gene: 17231263

Following gene: 17231267

Centisome position: 71.14

GC content: 36.93

Gene sequence:

>696_bases
ATGATTCCTATTAGTGATAACTTACATTTTCGTGAACGTCCGATTATTAATTATTGGTTGATTGGTATTAATATTTTTAT
CTTCCTCTGGGAAATAAAACTAGAACTGAGTGGTGAATTAGGCTATTTCATTAACACTTGGGGTTTAGTTCCATCCCAAA
TTAGTACAGCGCTTCATAATGCACTGATAAATCCTGCGGCTTGGGTAGTAGTGTTTGGGCGTTTATTTTCTTTGTTGTTT
GCCATATTTCTCCACGGCAGTTTTAGCCAAATATTGGGGAATATGTTATTTTTATGGGTGTTTGGTAAAGCAGTAGAGAA
TATTTTAGGACATAAGCATTATTTAGGATTTTATCTGGTCGCTGGCGTTGTCACAGGGTTAGCACAGATTATCATTGAAC
CAAATTTGACTGTACCACTTGTTGGTGCAAATGGAGCGATCGCCGCAGTTTTGGGAGCGTATATAATCAAGTTTCCTAAT
GTTAAAATAGACACCATTTTACCGTTAATTCTTATTTATATTCCCATTGAATTACCTGCTTCTTTCTATTCATTATGGTG
GTATATTCAACAGTTATTCTATGGCATTGGTAGTTTAAACATTCCACCAATGGGAGTCAATCAACCCAGCCTAGCCTACT
GGATGCAGCTTGTAGCCATGACTATTGGCGCAGCCTATATCCGAAAAAAATTCTGA

Upstream 100 bases:

>100_bases
GTGTCTGATTCCAATCTTGCCACAGATTCTTTAAGGTGCGGGGAGAAGAAGTAGGGAGTATGGGGGAAGAACTAATAACA
ACTGACCACTAACAAATTTA

Downstream 100 bases:

>100_bases
AACACCTTTTCTGATAAACTCCGCCCTTGATACTCCCTGTCATCCGTATAAAAACATACGGTTATTGCTAAATACACTTT
AGCAGTAGGTAATGGATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MIPISDNLHFRERPIINYWLIGINIFIFLWEIKLELSGELGYFINTWGLVPSQISTALHNALINPAAWVVVFGRLFSLLF
AIFLHGSFSQILGNMLFLWVFGKAVENILGHKHYLGFYLVAGVVTGLAQIIIEPNLTVPLVGANGAIAAVLGAYIIKFPN
VKIDTILPLILIYIPIELPASFYSLWWYIQQLFYGIGSLNIPPMGVNQPSLAYWMQLVAMTIGAAYIRKKF

Sequences:

>Translated_231_residues
MIPISDNLHFRERPIINYWLIGINIFIFLWEIKLELSGELGYFINTWGLVPSQISTALHNALINPAAWVVVFGRLFSLLF
AIFLHGSFSQILGNMLFLWVFGKAVENILGHKHYLGFYLVAGVVTGLAQIIIEPNLTVPLVGANGAIAAVLGAYIIKFPN
VKIDTILPLILIYIPIELPASFYSLWWYIQQLFYGIGSLNIPPMGVNQPSLAYWMQLVAMTIGAAYIRKKF
>Mature_231_residues
MIPISDNLHFRERPIINYWLIGINIFIFLWEIKLELSGELGYFINTWGLVPSQISTALHNALINPAAWVVVFGRLFSLLF
AIFLHGSFSQILGNMLFLWVFGKAVENILGHKHYLGFYLVAGVVTGLAQIIIEPNLTVPLVGANGAIAAVLGAYIIKFPN
VKIDTILPLILIYIPIELPASFYSLWWYIQQLFYGIGSLNIPPMGVNQPSLAYWMQLVAMTIGAAYIRKKF

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25955; Mature: 25955

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPISDNLHFRERPIINYWLIGINIFIFLWEIKLELSGELGYFINTWGLVPSQISTALHN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHCCCCHHHHHHHHHH
ALINPAAWVVVFGRLFSLLFAIFLHGSFSQILGNMLFLWVFGKAVENILGHKHYLGFYLV
HHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AGVVTGLAQIIIEPNLTVPLVGANGAIAAVLGAYIIKFPNVKIDTILPLILIYIPIELPA
HHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
SFYSLWWYIQQLFYGIGSLNIPPMGVNQPSLAYWMQLVAMTIGAAYIRKKF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPISDNLHFRERPIINYWLIGINIFIFLWEIKLELSGELGYFINTWGLVPSQISTALHN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHCCCCHHHHHHHHHH
ALINPAAWVVVFGRLFSLLFAIFLHGSFSQILGNMLFLWVFGKAVENILGHKHYLGFYLV
HHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AGVVTGLAQIIIEPNLTVPLVGANGAIAAVLGAYIIKFPNVKIDTILPLILIYIPIELPA
HHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
SFYSLWWYIQQLFYGIGSLNIPPMGVNQPSLAYWMQLVAMTIGAAYIRKKF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA