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The map label for this gene is yddH [H]

Identifier: 17230871

GI number: 17230871

Start: 4090779

End: 4091483

Strand: Direct

Name: yddH [H]

Synonym: alr3379

Alternate gene names: 17230871

Gene position: 4090779-4091483 (Clockwise)

Preceding gene: 17230869

Following gene: 17230872

Centisome position: 63.78

GC content: 44.82

Gene sequence:

>705_bases
ATGCTCTCTAATTTAGAATCGTCCATCCAAAGCCCCAAATTGGGAGAATACCAATGTCTTGCTGCGTTGAATTTATATGA
TTCTCCTGAATGTACCAGCTTGGCTACTCAGGCCGCAGTCGGGCGACATTTGCGGGTAACATCAAATCAGCAAGGTGCGG
CAGTTGAGGTGTGTTTATGTGAGGATGACTACCCAGGGTGGCTATCCCTTGGAGACTGGGGTTTATTAAAACCTGCTACT
GTACTTTATCAGGCTAAATCATTTTCGGAATCGGAAATTAAAAAACTGCTACCAGAGGCGATCGCTTTTACTCAAAAAGC
CATGCAACAATCAAACTATTACCTCTGGGGTGGCACGGTCGGGCCAAATTTTGATTGTTCTGGTTTAATGCAGGCGGCGT
TTGTATCTGCGGGAATTTGGCTACCCAGAGACGCTTATCAACAAGAGGCTTTTACCCAAGCAATTACTATTGACGAATTA
ACACCGGGTGACTTGGTATTTTTTGGCACTCCTGTAAAAGCCACCCATGTAGGACTGTATTTAGGAGATAGTCATTACAT
CCATAGTTCTGGTAAAGCACAAGGACGCGATGGGATTGGAATTGATATCCTTTCGGAACAGGGAGACGTGGTAAGTCGGT
CATACTATCAGCAACTACGAGGCGCTGGCAGAGTTGTTAAAAGTTACGAACCACAAAGACACTAA

Upstream 100 bases:

>100_bases
GGTTACGGGCTAAAGTCGGAAATGCCGTCCAAGTAGCTTCTAAAATACCATTACCCAGATTTTCTAGTTGTTCGTCTTTT
TGAAAAAAAACCATTGCAGA

Downstream 100 bases:

>100_bases
GGACACTGAGGAATATGAGGAATGGAGTAATTTCAGCCAGGGTGAACGAAGGAAATGAAAGTATTTCCGCCATGATTCCC
GATGTTTCCCTGGTGGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLSNLESSIQSPKLGEYQCLAALNLYDSPECTSLATQAAVGRHLRVTSNQQGAAVEVCLCEDDYPGWLSLGDWGLLKPAT
VLYQAKSFSESEIKKLLPEAIAFTQKAMQQSNYYLWGGTVGPNFDCSGLMQAAFVSAGIWLPRDAYQQEAFTQAITIDEL
TPGDLVFFGTPVKATHVGLYLGDSHYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYEPQRH

Sequences:

>Translated_234_residues
MLSNLESSIQSPKLGEYQCLAALNLYDSPECTSLATQAAVGRHLRVTSNQQGAAVEVCLCEDDYPGWLSLGDWGLLKPAT
VLYQAKSFSESEIKKLLPEAIAFTQKAMQQSNYYLWGGTVGPNFDCSGLMQAAFVSAGIWLPRDAYQQEAFTQAITIDEL
TPGDLVFFGTPVKATHVGLYLGDSHYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYEPQRH
>Mature_234_residues
MLSNLESSIQSPKLGEYQCLAALNLYDSPECTSLATQAAVGRHLRVTSNQQGAAVEVCLCEDDYPGWLSLGDWGLLKPAT
VLYQAKSFSESEIKKLLPEAIAFTQKAMQQSNYYLWGGTVGPNFDCSGLMQAAFVSAGIWLPRDAYQQEAFTQAITIDEL
TPGDLVFFGTPVKATHVGLYLGDSHYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYEPQRH

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=78, Percent_Identity=35.8974358974359, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 25565; Mature: 25565

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNLESSIQSPKLGEYQCLAALNLYDSPECTSLATQAAVGRHLRVTSNQQGAAVEVCLC
CCCCHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEE
EDDYPGWLSLGDWGLLKPATVLYQAKSFSESEIKKLLPEAIAFTQKAMQQSNYYLWGGTV
CCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
GPNFDCSGLMQAAFVSAGIWLPRDAYQQEAFTQAITIDELTPGDLVFFGTPVKATHVGLY
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCEEEEECCCCEEEEEEE
LGDSHYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYEPQRH
ECCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLSNLESSIQSPKLGEYQCLAALNLYDSPECTSLATQAAVGRHLRVTSNQQGAAVEVCLC
CCCCHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEE
EDDYPGWLSLGDWGLLKPATVLYQAKSFSESEIKKLLPEAIAFTQKAMQQSNYYLWGGTV
CCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
GPNFDCSGLMQAAFVSAGIWLPRDAYQQEAFTQAITIDELTPGDLVFFGTPVKATHVGLY
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCEEEEECCCCEEEEEEE
LGDSHYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYEPQRH
ECCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]