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The map label for this gene is ybgI [C]

Identifier: 17230708

GI number: 17230708

Start: 3883681

End: 3884472

Strand: Direct

Name: ybgI [C]

Synonym: alr3216

Alternate gene names: 17230708

Gene position: 3883681-3884472 (Clockwise)

Preceding gene: 17230707

Following gene: 17230709

Centisome position: 60.55

GC content: 45.71

Gene sequence:

>792_bases
ATGAAAATTGCGGATTTAATTACTTGGTTTGAATCTTGGGCGAATCCGGCTTGGTGTGAAAGTTGGGATAATTGCGGCTG
GCAAATTGAACCTGGAATACTGCACGAAGAGGCTAGAGTTTTGGTTTGTCTAACACCAACTTTGGCGGTAATGGAGGAAG
CGATCGCACTCCAAGCTAATCTGATTTTTGCCCATCATCCTTTGATTTTCAGCCCTCCCAAATCTCTACGTCGTGGTGAA
GCGATCGCCGATATGGCAAGGTTAGCCTTTACCAAAAATATCGGTATTTACAGCGCTCACACCAATTTTGACCAAGTAGA
AGATGGTACGGCTGATGTTTTGGCGCAAATTTTGGGACTCAAGGATGTTGCTCCCATCGTCCCAACCCAAGGGGGGCTAG
GTTATGGGCGTGTCGGGTTACTAGATCCATTTTTAAATTTACAAGAGTTATTGACTGTAATTCAAACCCGCCTGGCTCCT
CCTGATTTAATTTTTTCCCCCACTGCGGATTTACAGCAGATAATTTCACGGGTGGCTGTGTTGGGTGGTTCGGGTGCGGG
TTTTATTTCGGCGGTAGCCGAAACTGGTGCGGAAGCTTATCTGACTTCTGACTGCAAGTTCCATCAGTTTCAAGAAAGCC
GCGATCGCGGTTTAATTCTCATCGACGCTGGACATTATGCAACTGAACGCCCGGCTTGCGATCGCTTAGTAGAAAAATTG
CGGTCTTTAAATCTACATTGGGTGCAATTGAGCAACCAAGATGAGGATTTTCGCCAATTTTTTGTGAAATAG

Upstream 100 bases:

>100_bases
CAGCATGGAGTTGGAATGCTTCTCCTGTGTGGAATCAGCCTTTTGAGGAGATGCGTGAGCAATTAGCATTAAAATTAAAT
ATTCAACCACAGAGACACTG

Downstream 100 bases:

>100_bases
GACAGGAGGGGATATGTAATTAAATATTAATTATTATTTAGTAGCTTTTTTATTTTTCCTTTAAGTAAATTTACGTTATT
AATTTTAATATCTAAGTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKIADLITWFESWANPAWCESWDNCGWQIEPGILHEEARVLVCLTPTLAVMEEAIALQANLIFAHHPLIFSPPKSLRRGE
AIADMARLAFTKNIGIYSAHTNFDQVEDGTADVLAQILGLKDVAPIVPTQGGLGYGRVGLLDPFLNLQELLTVIQTRLAP
PDLIFSPTADLQQIISRVAVLGGSGAGFISAVAETGAEAYLTSDCKFHQFQESRDRGLILIDAGHYATERPACDRLVEKL
RSLNLHWVQLSNQDEDFRQFFVK

Sequences:

>Translated_263_residues
MKIADLITWFESWANPAWCESWDNCGWQIEPGILHEEARVLVCLTPTLAVMEEAIALQANLIFAHHPLIFSPPKSLRRGE
AIADMARLAFTKNIGIYSAHTNFDQVEDGTADVLAQILGLKDVAPIVPTQGGLGYGRVGLLDPFLNLQELLTVIQTRLAP
PDLIFSPTADLQQIISRVAVLGGSGAGFISAVAETGAEAYLTSDCKFHQFQESRDRGLILIDAGHYATERPACDRLVEKL
RSLNLHWVQLSNQDEDFRQFFVK
>Mature_263_residues
MKIADLITWFESWANPAWCESWDNCGWQIEPGILHEEARVLVCLTPTLAVMEEAIALQANLIFAHHPLIFSPPKSLRRGE
AIADMARLAFTKNIGIYSAHTNFDQVEDGTADVLAQILGLKDVAPIVPTQGGLGYGRVGLLDPFLNLQELLTVIQTRLAP
PDLIFSPTADLQQIISRVAVLGGSGAGFISAVAETGAEAYLTSDCKFHQFQESRDRGLILIDAGHYATERPACDRLVEKL
RSLNLHWVQLSNQDEDFRQFFVK

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family

Homologues:

Organism=Homo sapiens, GI215272362, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI209862879, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI215272360, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI56605983, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786928, Length=207, Percent_Identity=28.0193236714976, Blast_Score=74, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6321217, Length=264, Percent_Identity=25.7575757575758, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19921430, Length=233, Percent_Identity=24.8927038626609, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3216_NOSS1 (Q8YS75)

Other databases:

- EMBL:   BA000019
- PIR:   AI2207
- RefSeq:   NP_487256.1
- ProteinModelPortal:   Q8YS75
- STRING:   Q8YS75
- GeneID:   1106814
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr3216
- NMPDR:   fig|103690.1.peg.3523
- eggNOG:   COG0327
- HOGENOM:   HBG285184
- OMA:   YYHVGHD
- PhylomeDB:   Q8YS75
- ProtClustDB:   CLSK895907
- BioCyc:   NSP103690:ALR3216-MONOMER
- InterPro:   IPR002678
- PANTHER:   PTHR13799
- TIGRFAMs:   TIGR00486

Pfam domain/function: PF01784 NIF3; SSF102705 interacting_NIF3

EC number: NA

Molecular weight: Translated: 29097; Mature: 29097

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIADLITWFESWANPAWCESWDNCGWQIEPGILHEEARVLVCLTPTLAVMEEAIALQAN
CCHHHHHHHHHHHCCCHHHCCCCCCCCEECCCEECCCCEEEEEECCHHHHHHHHHHHHHE
LIFAHHPLIFSPPKSLRRGEAIADMARLAFTKNIGIYSAHTNFDQVEDGTADVLAQILGL
EEEEECCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCCCHHHHHHHHHCH
KDVAPIVPTQGGLGYGRVGLLDPFLNLQELLTVIQTRLAPPDLIFSPTADLQQIISRVAV
HHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHH
LGGSGAGFISAVAETGAEAYLTSDCKFHQFQESRDRGLILIDAGHYATERPACDRLVEKL
HCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
RSLNLHWVQLSNQDEDFRQFFVK
HHCCEEEEEECCCCHHHHHHHCC
>Mature Secondary Structure
MKIADLITWFESWANPAWCESWDNCGWQIEPGILHEEARVLVCLTPTLAVMEEAIALQAN
CCHHHHHHHHHHHCCCHHHCCCCCCCCEECCCEECCCCEEEEEECCHHHHHHHHHHHHHE
LIFAHHPLIFSPPKSLRRGEAIADMARLAFTKNIGIYSAHTNFDQVEDGTADVLAQILGL
EEEEECCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCCCHHHHHHHHHCH
KDVAPIVPTQGGLGYGRVGLLDPFLNLQELLTVIQTRLAPPDLIFSPTADLQQIISRVAV
HHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHH
LGGSGAGFISAVAETGAEAYLTSDCKFHQFQESRDRGLILIDAGHYATERPACDRLVEKL
HCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
RSLNLHWVQLSNQDEDFRQFFVK
HHCCEEEEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840