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The map label for this gene is ycf3 [H]

Identifier: 17230685

GI number: 17230685

Start: 3861546

End: 3862067

Strand: Reverse

Name: ycf3 [H]

Synonym: all3193

Alternate gene names: 17230685

Gene position: 3862067-3861546 (Counterclockwise)

Preceding gene: 17230686

Following gene: 17230684

Centisome position: 60.22

GC content: 43.49

Gene sequence:

>522_bases
ATGCCAAGAACACAAAAAAACGATAACTTTGTTGACAAATCCTTTACTGTGATGGCGGATATTATTCTCAAGATACTGCC
AACTAATAAAAAAGCTAAAGAAGCCTTTGTCTATTACCGAGATGGGATGTCAGCTCAAGCAGAAGGCGAATATGCCGAAG
CACTCGAATATTACGAAGAAGCCCTCACACTAGAAGAAGACACCAACGATCGCGGTTATATTCTCTACAACATGGGGCTA
ATTTATGCTAGCAACGGCGACCATGATAAAGCTCTAGAACTATATCACCAGGCGATCGAACTGAATCCCCGCCTACCCCA
AGCCTTAAACAACATCGCCGTAATTTACCATTACCAAGGCGAAAAAGCCAAAGAAACTGGAGATCACGACGGTGGTGAAG
CGCTGTTTGACCAAGCCGCAGACTACTGGATTCGTGCCATTCGCATGGCTCCAAATAACTATATAGAAGCCCAAAACTGG
CTAAAAACCACTGGACGGATGCAAATAGATGTATTCTTTTAG

Upstream 100 bases:

>100_bases
AGAATAGCTCCCCAAATCAGTTAAATTAGCTTTAGGTACGGGATTAGGGGAAGCACAGACATAAGTTCCCCCACATAGCG
GTACAACCATAGAAAAAAAT

Downstream 100 bases:

>100_bases
TCGTTAGTCATTAGTTCTTGACCACTGACCACTGACCACTGACAAAATATGATCGACCGCGAACAAGTCCGCAAAGTAGC
TCTACTTGCCCGTTTAGAAT

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPRTQKNDNFVDKSFTVMADIILKILPTNKKAKEAFVYYRDGMSAQAEGEYAEALEYYEEALTLEEDTNDRGYILYNMGL
IYASNGDHDKALELYHQAIELNPRLPQALNNIAVIYHYQGEKAKETGDHDGGEALFDQAADYWIRAIRMAPNNYIEAQNW
LKTTGRMQIDVFF

Sequences:

>Translated_173_residues
MPRTQKNDNFVDKSFTVMADIILKILPTNKKAKEAFVYYRDGMSAQAEGEYAEALEYYEEALTLEEDTNDRGYILYNMGL
IYASNGDHDKALELYHQAIELNPRLPQALNNIAVIYHYQGEKAKETGDHDGGEALFDQAADYWIRAIRMAPNNYIEAQNW
LKTTGRMQIDVFF
>Mature_172_residues
PRTQKNDNFVDKSFTVMADIILKILPTNKKAKEAFVYYRDGMSAQAEGEYAEALEYYEEALTLEEDTNDRGYILYNMGLI
YASNGDHDKALELYHQAIELNPRLPQALNNIAVIYHYQGEKAKETGDHDGGEALFDQAADYWIRAIRMAPNNYIEAQNWL
KTTGRMQIDVFF

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 19918; Mature: 19787

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTQKNDNFVDKSFTVMADIILKILPTNKKAKEAFVYYRDGMSAQAEGEYAEALEYYEE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCHHHHHHHHHH
ALTLEEDTNDRGYILYNMGLIYASNGDHDKALELYHQAIELNPRLPQALNNIAVIYHYQG
HHCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHCCEEEEEEECC
EKAKETGDHDGGEALFDQAADYWIRAIRMAPNNYIEAQNWLKTTGRMQIDVFF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEC
>Mature Secondary Structure 
PRTQKNDNFVDKSFTVMADIILKILPTNKKAKEAFVYYRDGMSAQAEGEYAEALEYYEE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCHHHHHHHHHH
ALTLEEDTNDRGYILYNMGLIYASNGDHDKALELYHQAIELNPRLPQALNNIAVIYHYQG
HHCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHCCEEEEEEECC
EKAKETGDHDGGEALFDQAADYWIRAIRMAPNNYIEAQNWLKTTGRMQIDVFF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA