Click here to switch to the map view.

The map label for this gene is lrtA [H]

Identifier: 17230676

GI number: 17230676

Start: 3853345

End: 3853986

Strand: Reverse

Name: lrtA [H]

Synonym: all3184

Alternate gene names: 17230676

Gene position: 3853986-3853345 (Counterclockwise)

Preceding gene: 17230678

Following gene: 17230673

Centisome position: 60.09

GC content: 44.39

Gene sequence:

>642_bases
ATGAAGCTTGTCATCCACGGCAAAAATATAGAAATTACCGATGCGATTCGAGAATATGTGCATCAGAAAATTGAAAAGGC
GGTTAATCACTTTCAGAACATCACCAATGAAGTGGATGTCCATTTAAGCGTGGCGCGCAATCCCCGGATTAATACCAGGC
AAGCGGCTGAAGTCACCATCTATGCAAATGGTAGCGTCATCCGTGCGGAGGAAAGCAGCGAAAATTTATACGCAAGCATT
GATCTAGTAGCAGACAAGATTTCCCGACAACTGCGTAAATATAAAGAAAGAAAACAAGATCAGAAAACTCAAGCTCAACC
AACTACCGAAACCATCGTACCAGAAACAGTAGTTGCAGATTTAATCGGCGATCGCACTCCCGAACTCCCCGAAGAAGTCG
TCCGCACCAAATATTTTTCCATGCCCCCCATGACCGTTACCGAAGCCTTAGAGCAGTTGCAACTAGTGGGGCATGACTTT
TATATGTTCCATAACGCCGAAACAGGAGAAATCAACGTTATTTATGAACGCAACCACGGCGGCTATGGTGTGATTCAACC
CCGAAATAATAACGGACATACCAACGGTAAAAATGGCAAAGCTCATCATGTCGTGATGCCGGAAAAGTCTCATAGTAGGT
AA

Upstream 100 bases:

>100_bases
CACATTTGGTATTGGTGCAATAAATAGAACTTACCGCAGTCTCTTTTCATACAAAAACACCATCACATCAAATATTGTGC
TATTGAGCGGGAGAGTTTAC

Downstream 100 bases:

>100_bases
GGGACTGGGGACTGGGGACTGGGAGAGCAGGGGAGCAGGGGAAGCAGGGGAGGCAGGTGGTAAATTTCATCACCGATACC
CAATCCCCAATCCCCAATCC

Product: light-repressed protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINTRQAAEVTIYANGSVIRAEESSENLYASI
DLVADKISRQLRKYKERKQDQKTQAQPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDF
YMFHNAETGEINVIYERNHGGYGVIQPRNNNGHTNGKNGKAHHVVMPEKSHSR

Sequences:

>Translated_213_residues
MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINTRQAAEVTIYANGSVIRAEESSENLYASI
DLVADKISRQLRKYKERKQDQKTQAQPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDF
YMFHNAETGEINVIYERNHGGYGVIQPRNNNGHTNGKNGKAHHVVMPEKSHSR
>Mature_213_residues
MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINTRQAAEVTIYANGSVIRAEESSENLYASI
DLVADKISRQLRKYKERKQDQKTQAQPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDF
YMFHNAETGEINVIYERNHGGYGVIQPRNNNGHTNGKNGKAHHVVMPEKSHSR

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=97, Percent_Identity=38.1443298969072, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 24234; Mature: 24234

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINTRQAAEVTI
CEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEE
YANGSVIRAEESSENLYASIDLVADKISRQLRKYKERKQDQKTQAQPTTETIVPETVVAD
EECCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHH
LIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNAETGEINVIYERNHG
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCC
GYGVIQPRNNNGHTNGKNGKAHHVVMPEKSHSR
CEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINTRQAAEVTI
CEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEE
YANGSVIRAEESSENLYASIDLVADKISRQLRKYKERKQDQKTQAQPTTETIVPETVVAD
EECCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHH
LIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNAETGEINVIYERNHG
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCC
GYGVIQPRNNNGHTNGKNGKAHHVVMPEKSHSR
CEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]