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The map label for this gene is ycf44 [H]

Identifier: 17230615

GI number: 17230615

Start: 3781960

End: 3783345

Strand: Direct

Name: ycf44 [H]

Synonym: alr3123

Alternate gene names: 17230615

Gene position: 3781960-3783345 (Clockwise)

Preceding gene: 17230614

Following gene: 17230617

Centisome position: 58.97

GC content: 43.36

Gene sequence:

>1386_bases
ATGACTACAGACAATTCAGCCCCCACAGCATCCCCTTGGTGGTCACTACCAGGAAAATTTTTGCGGCGAGAGTTTTTACC
TGTACTGACAGATTTACGTTTAGCGATCGCTCTATTATTAATCATTGCTCTCTTCAGTATCTCTGGTACTGTGATTGAGC
AAGGGCAATCACCAGCATTTTATCAATCTAACTACCCAGAACACCCCGCCTTATTCGGTTTCCTCACTTGGAAGGTGATC
CAAGTGGTGGGGTTAGATCATGTTTATCGGACTTGGTGGTTTCTCTCCTTATTAGTTTTATTCGGGACTAGTCTGACCGC
TTGTACTTTTACCCGTCAGTTACCAGCCTTAAAAACTGCCCAACGCTGGAAGTATTACGAAGAACCACGCCAATTTCAAA
AACTCGCTTTAAGTGCAGAACTAGACGCTGGTTCTGTCAATTCCTTAAGCCAAATATTACAAAATCGCCGTTATAAAATT
TTTCAAGAAAAAGACGATATTCTCTACGCTCGTAAGGGAATAGTCGGGCGCATCGGCCCTATCATTGTGCATATAGGTAT
CGTCACCATCCTCTTGGGGTCAATTTGGGGCGCAATGACAGGATTTATTGCCCAAGAAATGGTTCCCAGTGGCGAAACCT
TCCAGGTAAAAAATATTATCGATGCAGGACCATTAGCAGCCGGACAATTTCCCCAAGACTGGTCTGTACGTGTTAATCGT
TTTTGGATTGACTACACTCCTAAAGGTGGAATTGACCAATTTTACTCAGATATGTCTGTCTTAGATAATCAGGGACAGGA
AGTTGACCACAAAAAGATTTTCGTCAACCAACCTCTGCGTTATCATGGCGTAACTTTCTACCAAACTGATTGGGGTATTT
CTGGTGTTCGTGTCCGCCTCAACAAAAGCCCCATCTTTCAGCTACCAATGGCACTTTTGAATACTAACGGACAAGGGCGG
ATTTGGGGAACATGGATTCCGACAAAACCAGATTTGAGTGAGGGCGTTTCCCTGTTAGCGAAAGACTTGCAAGGTATGGT
GTTAATCTATGATGCCCAGGGTAAGCTAGTTGATACTGTACGTGCAGGGATGTCTACTCAAGTAAATGGTGTGACACTCA
AAGTTTTAGATGTAGTTGGTAGTACTGGCTTACAAATTAAAGCCGACCCTGGTATTCCCATTGTTTACACTGGCTTTGGT
ATCCTGATGCTGGGTGTAGTGATGAGTTACTTTTCTCACTCACAAATTTGGGCGTTACAAAAAGGCGATCGCTTATATGT
TGGTGGTAAAACCAATCGCGCTCAAGTGGCTTTTGAACAAGAAGTTCTGGATATTTTAGAACGCTTGAATTCACAATCGG
CGACAGTCATTAATCAGCAGTCCTAA

Upstream 100 bases:

>100_bases
GCGTTGGTCTGGTTGGATAAATCCAGTTAGCGGTGCATTATTGGTAGGATTTGGCGTATTTTCTCTAATTTCTCGGATTC
CTCTAGGCAGTTTTTAAGCA

Downstream 100 bases:

>100_bases
ATGTGATGGGGAAGGAGGTAATTATTATTCTTTCCCCATTTCTTCCATCTCTGATACAACCTGCATAAATTATACTCAGC
TTAGGCGACACCGTAATCTG

Product: c-type cytochrome biogenesis protein Ccs1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQSNYPEHPALFGFLTWKVI
QVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKI
FQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
FWIDYTPKGGIDQFYSDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGR
IWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFG
ILMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLDILERLNSQSATVINQQS

Sequences:

>Translated_461_residues
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQSNYPEHPALFGFLTWKVI
QVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKI
FQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
FWIDYTPKGGIDQFYSDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGR
IWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFG
ILMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLDILERLNSQSATVINQQS
>Mature_460_residues
TTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQSNYPEHPALFGFLTWKVIQ
VVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIF
QEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNRF
WIDYTPKGGIDQFYSDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGRI
WGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGI
LMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLDILERLNSQSATVINQQS

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 51509; Mature: 51378

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCC
YQSNYPEHPALFGFLTWKVIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
QRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH
IIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
FWIDYTPKGGIDQFYSDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRL
EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCEEEEEECCCCCEEEEEE
NKSPIFQLPMALLNTNGQGRIWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTV
CCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
RAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQ
HCCCCCCCCCEEEEEEEHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEE
KGDRLYVGGKTNRAQVAFEQEVLDILERLNSQSATVINQQS
CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure 
TTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCC
YQSNYPEHPALFGFLTWKVIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
QRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH
IIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
FWIDYTPKGGIDQFYSDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRL
EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCEEEEEECCCCCEEEEEE
NKSPIFQLPMALLNTNGQGRIWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTV
CCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
RAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQ
HCCCCCCCCCEEEEEEEHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEE
KGDRLYVGGKTNRAQVAFEQEVLDILERLNSQSATVINQQS
CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA