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The map label for this gene is yqgF [C]

Identifier: 17230592

GI number: 17230592

Start: 3752321

End: 3752776

Strand: Direct

Name: yqgF [C]

Synonym: alr3100

Alternate gene names: 17230592

Gene position: 3752321-3752776 (Clockwise)

Preceding gene: 17230591

Following gene: 17230593

Centisome position: 58.5

GC content: 44.3

Gene sequence:

>456_bases
ATGACTAAATACATTTCAGCCTTGGGATTGGATGTGGGGCGTAAGCGTGTTGGTGTAGCTGGATGCGATCGCACTGGGTT
GATTGCTACGGGAATTACCACCGTTGAGCGCACATCTTTTGACCGGGATGTCCAGCAAATACAAAATATAGTTAATGAAC
GCCAGGTACAAGTTCTGGTTGTGGGTTTGCCATATTCAATGGATGGTTCCTTAGGATTTCAGGCTCGTCAAGTGCAGAAA
TTTACGTCAAGGCTGGCTAAAGCTTTGCAGTTACCTGTGGAATATGTTGATGAGCGACTGACTTCTTTTCAAGCAGAACA
GATGCTCATCGCTGAAAATGTTTCCCCATCACGGAATAAAGGTTTAATTGATCGCAAGGCAGCAGCTTTAATTTTGCAGC
AGTGGTTGGATATTAGACGAACTAATGCTCAGAGTTCAGTGGCAGTAGAGTATTGA

Upstream 100 bases:

>100_bases
AAGATGTACCTAATCAGCCAGAGACAGAAGATGGGGAGATTGGGGAGTAGGGGAAGCAGGGTAAAGAAAATTGGCAACTG
ACAACTGTGACAACTGACTA

Downstream 100 bases:

>100_bases
TACCTTTGAACATGATATTCTGAAAGCTGTTACACAGCAGTTGTATCTAAGATTAAAGCTATTTGCTTGACATGATATGT
CATTCAAGAGCAAAGCTTTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTKYISALGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSMDGSLGFQARQVQK
FTSRLAKALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRKAAALILQQWLDIRRTNAQSSVAVEY

Sequences:

>Translated_151_residues
MTKYISALGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSMDGSLGFQARQVQK
FTSRLAKALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRKAAALILQQWLDIRRTNAQSSVAVEY
>Mature_150_residues
TKYISALGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSMDGSLGFQARQVQKF
TSRLAKALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRKAAALILQQWLDIRRTNAQSSVAVEY

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=130, Percent_Identity=28.4615384615385, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ANAVT (Q3M6H7)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_324304.1
- ProteinModelPortal:   Q3M6H7
- SMR:   Q3M6H7
- STRING:   Q3M6H7
- GeneID:   3678774
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_3804
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q3M6H7
- ProtClustDB:   PRK00109
- BioCyc:   AVAR240292:AVA_3804-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16800; Mature: 16668

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKYISALGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLV
CCHHHHHHHHHCCCHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VGLPYSMDGSLGFQARQVQKFTSRLAKALQLPVEYVDERLTSFQAEQMLIAENVSPSRNK
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLIDRKAAALILQQWLDIRRTNAQSSVAVEY
CCHHHHHHHHHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure 
TKYISALGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLV
CHHHHHHHHHCCCHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VGLPYSMDGSLGFQARQVQKFTSRLAKALQLPVEYVDERLTSFQAEQMLIAENVSPSRNK
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLIDRKAAALILQQWLDIRRTNAQSSVAVEY
CCHHHHHHHHHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA