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The map label for this gene is degT [H]

Identifier: 17230504

GI number: 17230504

Start: 3654808

End: 3655956

Strand: Direct

Name: degT [H]

Synonym: alr3012

Alternate gene names: 17230504

Gene position: 3654808-3655956 (Clockwise)

Preceding gene: 17230501

Following gene: 17230507

Centisome position: 56.98

GC content: 45.0

Gene sequence:

>1149_bases
ATGATCCAAAGCCTAAGTTCGATTCCCGCCTTTGATATCAAGCAGCAATATGCTTCCATAGAAGCCGAAGTCAGCAGAGC
CGTTGTCGATGCGCTGGCTTCCGGGCGTTATATTGGTGGCCCTCCAGTCGAAAGTTTTGAGCAACAGTTTGCTGCTTATC
ATGGCGTTACTGATTGTGTAGCTTGTAATTCTGGTACAGATGCCCTATTTCTAGCTTTACGCGCCTTAGGAATCGGTGCA
GGCGATGAAGTAATTACTACACCCTTCACCTTTGTCGCTACGGCTGAAGTGATCAGCGCTGTAGGTGCAAAGCCGGTATT
TGTTGACATCGATGAGATAAGTTTTAACCTCGATTTACAACAAGTAGCGGCGGCGATTACACCCAAAACCAAAGCGATTA
TCCCAGTGCATTTATTTGGACAGCCTGTGGATATGACAAAGCTCATGGCGATCGCTCAAGCTCACAATGTCGCAGTAATT
GAAGATTGCGCTCAATCTACAGGCGCAAGTTGGGACGGCAAAAAGGTCGGTAGTATTGGACATATTGGTTGTTTTAGCTT
CTACCCCACCAAGAATTTAGGTGCTTGCGGCGATGGTGGCGCGATTACAACCAATGATCCAGAAATTGCTGCCAAGGTGC
GGATCATCAAGGAACATGGACAGAGACATCGTTATCAATATGAAGAAATAGGTGTTAATAGCCGCTTAGATGCCATTCAA
GCAGTAATTTTGCAGATTAAACTACCATATCTTGATATGTGGAATCGGCAAAGACAAGCGATCGCTGCCTATTATCAAAA
ATTCCTCAGTCAAATTCCCGGTATCATTCCCCCGCAAGAACTAGCTGGTGGCGTGAGTGTGTGGAATCAATATACTATTC
GCGTCATCACCGCAGGACGGAATGGCAATAGCGCCACACATCGGGAGACGGTAAAAAATAGCTTGCAAGAAAAGAAAGTA
GGCTCAATGGTTTACTACCCCTACCCTTTACATTTGCAGCCAGTTTATCAATATCTCGGTTATCAACCAGGACAATTACC
AGTTGCAGAACAAGCGTGCAATGAAGTCTTATCCTTACCCATGTTTCCCGAATTAACAACCGAACAGCAAGATCAAGTGA
TTTATGCTCTGAAGGATATTCTTTTGTAG

Upstream 100 bases:

>100_bases
TAGAGCGACACTCTTTTTAAATTTCTTTAAAGAAAAATTTCCCCAGTCAAAATTGACAATCGGAATGTATTCTTTGTATC
TTCAGACAAAATGAAAACTC

Downstream 100 bases:

>100_bases
GCAGAATGGGGAGTGGGGGAAGAGTTTTTAAATATTTCTCCCTCATCTCCCGCATTACTAACTAACGCGATGTGGGACTT
ATTCTTAAAACCCCTCTCCA

Product: pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MIQSLSSIPAFDIKQQYASIEAEVSRAVVDALASGRYIGGPPVESFEQQFAAYHGVTDCVACNSGTDALFLALRALGIGA
GDEVITTPFTFVATAEVISAVGAKPVFVDIDEISFNLDLQQVAAAITPKTKAIIPVHLFGQPVDMTKLMAIAQAHNVAVI
EDCAQSTGASWDGKKVGSIGHIGCFSFYPTKNLGACGDGGAITTNDPEIAAKVRIIKEHGQRHRYQYEEIGVNSRLDAIQ
AVILQIKLPYLDMWNRQRQAIAAYYQKFLSQIPGIIPPQELAGGVSVWNQYTIRVITAGRNGNSATHRETVKNSLQEKKV
GSMVYYPYPLHLQPVYQYLGYQPGQLPVAEQACNEVLSLPMFPELTTEQQDQVIYALKDILL

Sequences:

>Translated_382_residues
MIQSLSSIPAFDIKQQYASIEAEVSRAVVDALASGRYIGGPPVESFEQQFAAYHGVTDCVACNSGTDALFLALRALGIGA
GDEVITTPFTFVATAEVISAVGAKPVFVDIDEISFNLDLQQVAAAITPKTKAIIPVHLFGQPVDMTKLMAIAQAHNVAVI
EDCAQSTGASWDGKKVGSIGHIGCFSFYPTKNLGACGDGGAITTNDPEIAAKVRIIKEHGQRHRYQYEEIGVNSRLDAIQ
AVILQIKLPYLDMWNRQRQAIAAYYQKFLSQIPGIIPPQELAGGVSVWNQYTIRVITAGRNGNSATHRETVKNSLQEKKV
GSMVYYPYPLHLQPVYQYLGYQPGQLPVAEQACNEVLSLPMFPELTTEQQDQVIYALKDILL
>Mature_382_residues
MIQSLSSIPAFDIKQQYASIEAEVSRAVVDALASGRYIGGPPVESFEQQFAAYHGVTDCVACNSGTDALFLALRALGIGA
GDEVITTPFTFVATAEVISAVGAKPVFVDIDEISFNLDLQQVAAAITPKTKAIIPVHLFGQPVDMTKLMAIAQAHNVAVI
EDCAQSTGASWDGKKVGSIGHIGCFSFYPTKNLGACGDGGAITTNDPEIAAKVRIIKEHGQRHRYQYEEIGVNSRLDAIQ
AVILQIKLPYLDMWNRQRQAIAAYYQKFLSQIPGIIPPQELAGGVSVWNQYTIRVITAGRNGNSATHRETVKNSLQEKKV
GSMVYYPYPLHLQPVYQYLGYQPGQLPVAEQACNEVLSLPMFPELTTEQQDQVIYALKDILL

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=368, Percent_Identity=35.054347826087, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI2367285, Length=360, Percent_Identity=33.3333333333333, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41592; Mature: 41592

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSLSSIPAFDIKQQYASIEAEVSRAVVDALASGRYIGGPPVESFEQQFAAYHGVTDCV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHE
ACNSGTDALFLALRALGIGAGDEVITTPFTFVATAEVISAVGAKPVFVDIDEISFNLDLQ
ECCCCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEECCCCEECCCHH
QVAAAITPKTKAIIPVHLFGQPVDMTKLMAIAQAHNVAVIEDCAQSTGASWDGKKVGSIG
HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
HIGCFSFYPTKNLGACGDGGAITTNDPEIAAKVRIIKEHGQRHRYQYEEIGVNSRLDAIQ
CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHCCCHHHCCCCHHHHHHH
AVILQIKLPYLDMWNRQRQAIAAYYQKFLSQIPGIIPPQELAGGVSVWNQYTIRVITAGR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCCEEEEEEEECC
NGNSATHRETVKNSLQEKKVGSMVYYPYPLHLQPVYQYLGYQPGQLPVAEQACNEVLSLP
CCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
MFPELTTEQQDQVIYALKDILL
CCCCCCCCHHHHHHHHHHHHHC
>Mature Secondary Structure
MIQSLSSIPAFDIKQQYASIEAEVSRAVVDALASGRYIGGPPVESFEQQFAAYHGVTDCV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHE
ACNSGTDALFLALRALGIGAGDEVITTPFTFVATAEVISAVGAKPVFVDIDEISFNLDLQ
ECCCCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEECCCCEECCCHH
QVAAAITPKTKAIIPVHLFGQPVDMTKLMAIAQAHNVAVIEDCAQSTGASWDGKKVGSIG
HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
HIGCFSFYPTKNLGACGDGGAITTNDPEIAAKVRIIKEHGQRHRYQYEEIGVNSRLDAIQ
CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHCCCHHHCCCCHHHHHHH
AVILQIKLPYLDMWNRQRQAIAAYYQKFLSQIPGIIPPQELAGGVSVWNQYTIRVITAGR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCCEEEEEEEECC
NGNSATHRETVKNSLQEKKVGSMVYYPYPLHLQPVYQYLGYQPGQLPVAEQACNEVLSLP
CCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
MFPELTTEQQDQVIYALKDILL
CCCCCCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]