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The map label for this gene is sodB

Identifier: 17230430

GI number: 17230430

Start: 3576003

End: 3576605

Strand: Direct

Name: sodB

Synonym: alr2938

Alternate gene names: 17230430

Gene position: 3576003-3576605 (Clockwise)

Preceding gene: 17230429

Following gene: 17230431

Centisome position: 55.76

GC content: 44.44

Gene sequence:

>603_bases
ATGGCATTTGTACAGGAACCACTACCCTACGACTTTAATGCTTTAGAGCAGTATGGCATGAAAGGTGAAACCTTCGAGTA
TCACTACGGCAAACATCACAAAGCTTATGTAGATAACCTGAACAAGCTCACCGATGGTACAGAATTGGCTGATAAATCCT
TAGAAGAAGTCATCCAAATTGCCTTTAAGGATGCCTCTAAAGCTGGAATCTTTAACAACGCTGCTCAAGTGTGGAACCAC
ACCTTCTTCTGGAATTCTTTAAAGCCCGCAGGTGGCGGCGCGCCTACAGGTGAATTCGCAGCCAAAATTAACCAAGACTT
TGGTAGCTTCGACAAATTGAAAGAAGAATTTTCCAACGCTGCTGCAACTCAGTTCGGTAGCGGATGGGCTTGGCTAATTG
ATGATGGCGGTACACTGAAAGTCACTAAAACTCCAAACGCCGAAAATCCCCTGGCTCATGGACAAAAAGCACTCTTAACC
TTGGATGTCTGGGAACACGCCTACTACATCGACTTCAGAAATGCTCGCCCAGCTTTTATCAAGAACTACTTAGATAACTT
GGTTAACTGGGACTTTGCTGCTGCGAATTATGCTAAAGCTTAG

Upstream 100 bases:

>100_bases
AGGATTTAAGGATATAAAACTAGTCAGCACCAAACCTGTAATTTCCCAGGCTGCTGCAATAGCTTTTAAATGGAAACTGC
TAAAGAGAGGACTTCACAAA

Downstream 100 bases:

>100_bases
TTGTCCAGTCAGATGAGGGCTGTTGCTGAATCTCTCCAGCAGCAATAATTAATTTTTCTTCAACAAAACAAGCAGTCACG
ATTGAGTCGTGGCTGCTTTG

Product: iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAFVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNH
TFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLIDDGGTLKVTKTPNAENPLAHGQKALLT
LDVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAKA

Sequences:

>Translated_200_residues
MAFVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNH
TFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLIDDGGTLKVTKTPNAENPLAHGQKALLT
LDVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAKA
>Mature_199_residues
AFVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNHT
FFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLIDDGGTLKVTKTPNAENPLAHGQKALLTL
DVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=194, Percent_Identity=40.7216494845361, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI67782305, Length=194, Percent_Identity=40.7216494845361, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI67782309, Length=194, Percent_Identity=33.5051546391753, Blast_Score=97, Evalue=7e-21,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=52.2613065326633, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=42.9951690821256, Blast_Score=145, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=36.5482233502538, Blast_Score=116, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=34.5177664974619, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=35.1485148514851, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=33.502538071066, Blast_Score=109, Evalue=9e-25,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODF_NOSS1 (Q8YSZ1)

Other databases:

- EMBL:   BA000019
- PIR:   AC2173
- RefSeq:   NP_486978.1
- HSSP:   P09223
- ProteinModelPortal:   Q8YSZ1
- SMR:   Q8YSZ1
- STRING:   Q8YSZ1
- GeneID:   1106536
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr2938
- NMPDR:   fig|103690.1.peg.3245
- eggNOG:   COG0605
- HOGENOM:   HBG507761
- OMA:   WALVNWK
- PhylomeDB:   Q8YSZ1
- ProtClustDB:   CLSK287551
- BioCyc:   NSP103690:ALR2938-MONOMER
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 22384; Mature: 22253

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQI
CCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNA
HHHCCCCCCCHHHHHHHHCCHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
AATQFGSGWAWLIDDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFI
HHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHH
KNYLDNLVNWDFAAANYAKA
HHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure 
AFVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQI
CCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNA
HHHCCCCCCCHHHHHHHHCCHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
AATQFGSGWAWLIDDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFI
HHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHH
KNYLDNLVNWDFAAANYAKA
HHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840