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The map label for this gene is comF [H]

Identifier: 17230418

GI number: 17230418

Start: 3564298

End: 3564987

Strand: Direct

Name: comF [H]

Synonym: alr2926

Alternate gene names: 17230418

Gene position: 3564298-3564987 (Clockwise)

Preceding gene: 17230417

Following gene: 17230419

Centisome position: 55.57

GC content: 41.88

Gene sequence:

>690_bases
ATGCCAACATGGAGTCGCCACTTTCAAGGTCTGCTTGACCTGTTTTTGCAATCTAACTGTCCTCTGTGTCAAAGACCTAC
ATCTACTGAATTGTGTCCTAACTGCACCAGACAATTACAAAAATGCCATCATAAACACCCTCATGCTTTGTGGAAACAGC
CGATACCCGTATTTAGCTGGGGTTTGTATGGTGGTACTCTCAAACGAGCGATCGCACTGATGAAGTACGATAATCAACCC
CAAATTGCCCGTCCTTTGGGACAATGGCTAGGAGAAACTTGGTTGTTACATTCTCTTCATCAAACAACACAAATTTTAGT
TGTACCGATCCCACTCCACCCCAGCAAGCAAAAACAAAGAGGATACAATCAAGCAGCCTTAATTGCTCAAAGCTTTTGCC
AAACAACTGGACTAAAATTGCAACTAAATGGTTTGGCGAGAGTGCGCCAGACAACAGCGCAGTTTGGTTTATCAGTATCT
GAACGAGAAAATAACTTGGCTGAAGCTTTTGCAATTGGTCAAGATTTTCGTCATAGCTGCCCAAAAAGCCCAGTATTGTT
AATAGATGATATTTACACCACTGGTGCTACTGTTAAATCTGCCGTGCAGATACTGCGTCAAAATGAAATCACTGTCTTAG
GGTTAGCAACTACAGCCAGTGCTGTAAAAGATAGATACATCAAAAATTAA

Upstream 100 bases:

>100_bases
AGCAGTCAAGCTATATGAAAATCATGGCTACCAACCAGCCACGGGAGTGGAAACAACGCGGTGCGATCGCGTCTATGTCA
AATTCCTCAAGTAGCTTTAA

Downstream 100 bases:

>100_bases
TGGCAAGCTATCTCTGGGAAATCTATAATTAACCAAACCACCCAGTTGTTGTGGGAACATCACTTACAATGATCAGTAAA
TTTCTGACTAAAAATTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MPTWSRHFQGLLDLFLQSNCPLCQRPTSTELCPNCTRQLQKCHHKHPHALWKQPIPVFSWGLYGGTLKRAIALMKYDNQP
QIARPLGQWLGETWLLHSLHQTTQILVVPIPLHPSKQKQRGYNQAALIAQSFCQTTGLKLQLNGLARVRQTTAQFGLSVS
ERENNLAEAFAIGQDFRHSCPKSPVLLIDDIYTTGATVKSAVQILRQNEITVLGLATTASAVKDRYIKN

Sequences:

>Translated_229_residues
MPTWSRHFQGLLDLFLQSNCPLCQRPTSTELCPNCTRQLQKCHHKHPHALWKQPIPVFSWGLYGGTLKRAIALMKYDNQP
QIARPLGQWLGETWLLHSLHQTTQILVVPIPLHPSKQKQRGYNQAALIAQSFCQTTGLKLQLNGLARVRQTTAQFGLSVS
ERENNLAEAFAIGQDFRHSCPKSPVLLIDDIYTTGATVKSAVQILRQNEITVLGLATTASAVKDRYIKN
>Mature_228_residues
PTWSRHFQGLLDLFLQSNCPLCQRPTSTELCPNCTRQLQKCHHKHPHALWKQPIPVFSWGLYGGTLKRAIALMKYDNQPQ
IARPLGQWLGETWLLHSLHQTTQILVVPIPLHPSKQKQRGYNQAALIAQSFCQTTGLKLQLNGLARVRQTTAQFGLSVSE
RENNLAEAFAIGQDFRHSCPKSPVLLIDDIYTTGATVKSAVQILRQNEITVLGLATTASAVKDRYIKN

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 25743; Mature: 25612

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTWSRHFQGLLDLFLQSNCPLCQRPTSTELCPNCTRQLQKCHHKHPHALWKQPIPVFSW
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCHHCC
GLYGGTLKRAIALMKYDNQPQIARPLGQWLGETWLLHSLHQTTQILVVPIPLHPSKQKQR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHC
GYNQAALIAQSFCQTTGLKLQLNGLARVRQTTAQFGLSVSERENNLAEAFAIGQDFRHSC
CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
PKSPVLLIDDIYTTGATVKSAVQILRQNEITVLGLATTASAVKDRYIKN
CCCCEEEEECCHHCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTWSRHFQGLLDLFLQSNCPLCQRPTSTELCPNCTRQLQKCHHKHPHALWKQPIPVFSW
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCHHCC
GLYGGTLKRAIALMKYDNQPQIARPLGQWLGETWLLHSLHQTTQILVVPIPLHPSKQKQR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHC
GYNQAALIAQSFCQTTGLKLQLNGLARVRQTTAQFGLSVSERENNLAEAFAIGQDFRHSC
CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
PKSPVLLIDDIYTTGATVKSAVQILRQNEITVLGLATTASAVKDRYIKN
CCCCEEEEECCHHCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]