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The map label for this gene is exoD [H]

Identifier: 17230374

GI number: 17230374

Start: 3516116

End: 3516748

Strand: Direct

Name: exoD [H]

Synonym: alr2882

Alternate gene names: 17230374

Gene position: 3516116-3516748 (Clockwise)

Preceding gene: 17230373

Following gene: 17230376

Centisome position: 54.82

GC content: 41.71

Gene sequence:

>633_bases
GTGGCAATTCACATCAACTCACACCAAATACATTTGAGCTTTTCTCAAGAAATTAAGTCATTGCTGCAACGTTTAGCCGA
ACAGCATTTGACACTTGGCGACATTTTGGCAGAAACCTCAGAACGTGGTTTTAGCTTGGTAATTGCATTATTGGTTTTGC
CTTTCTTGTTTCCCATGCCACCAGGGGCAACAGGGCCTTTTGGTGCTGCCTGTCTGATATTATCGGTACAGATGCTTTTG
GGTAGGCGATCGCCTTGGCTACCTAAAAAAATCGCTCATTATAAATTCCCCCGTCCTTTTGCCCAGTTTCTCCTCCAAAA
TCTGCGGCGTGTCACCAAGGTTGTAGAGAAAATCGCCCGTCCCCGGTTAAGCAAAATAGCTCATAACCCATTAATTTGGC
GTATCAACGGGTTTTGTATATCTTGGTTGACAATATTACTTATCTCACCAATTCCCTTAACTAACCCGATACCTACTGTT
GGTATTTTATTATTAGCGATCGCCACAATTGAATCTGATGGTTTACTAATTTGCCTCAGCTATGTCGTCACTGCTGTCAT
TACAGTTATATTTGCATTTATTGGTTACGGTTTATGGTTGGCTCCTAGCATTCTACCGTCTATTTTTAAATAG

Upstream 100 bases:

>100_bases
ACTGACAACTGACAACTGACTTGATATCGTAAGAAATAATGGTGGGTGCATTTGTATTGATATTTCGTATTTATTTTAAG
TTAGATTAAGTGGGATTATT

Downstream 100 bases:

>100_bases
ATAATTAGCCAGGGTTTGTTTTTTGAAACCCTACGTAAAGCGGCTTTAGGTGCAGGTTGTTTTAAGAGTTTGTTCAATCC
CTGATAGGGATTTTTGTTAG

Product: exopolysaccharide synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMPPGATGPFGAACLILSVQMLL
GRRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIARPRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTV
GILLLAIATIESDGLLICLSYVVTAVITVIFAFIGYGLWLAPSILPSIFK

Sequences:

>Translated_210_residues
MAIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMPPGATGPFGAACLILSVQMLL
GRRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIARPRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTV
GILLLAIATIESDGLLICLSYVVTAVITVIFAFIGYGLWLAPSILPSIFK
>Mature_209_residues
AIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMPPGATGPFGAACLILSVQMLLG
RRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIARPRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTVG
ILLLAIATIESDGLLICLSYVVTAVITVIFAFIGYGLWLAPSILPSIFK

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 23331; Mature: 23199

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMP
CEEEECCCEEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PGATGPFGAACLILSVQMLLGRRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIAR
CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
PRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTVGILLLAIATIESDGLLICLS
HHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
YVVTAVITVIFAFIGYGLWLAPSILPSIFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMP
EEEECCCEEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PGATGPFGAACLILSVQMLLGRRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIAR
CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
PRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTVGILLLAIATIESDGLLICLS
HHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
YVVTAVITVIFAFIGYGLWLAPSILPSIFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]