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The map label for this gene is lcr1 [H]

Identifier: 17229972

GI number: 17229972

Start: 2978044

End: 2978895

Strand: Reverse

Name: lcr1 [H]

Synonym: all2480

Alternate gene names: 17229972

Gene position: 2978895-2978044 (Counterclockwise)

Preceding gene: 17229979

Following gene: 17229969

Centisome position: 46.45

GC content: 42.25

Gene sequence:

>852_bases
ATGTCTCGAAATCGACGAATGTCCCTAGCAATGATCGTTGCTATGACTACCCTTGTGCCATTTTTAACAATTAGCAATTT
TCGAGATATGCCTGGACACTCCCAGGAAATTCAGACACCTGCAATTCCGGTGAATGTTAACCTTGGGCGTTCATTTAATC
AACTGGGAATCAAAGGTTCTATTCTAATTTACGATCGCAACAACAAAAAATTTTACGAACACAACGCTGCTCGCAACTCA
CAATCGTTCCTTCCTGCCTCGACTTTTAAAATTTTTAATTCTCTGGTAGCTTTAGAGACTGGGGTAATTTCCAATGATGT
GGCTATTTTGACTTGGGACGGTATGCAGCGCCAGTTCCCCACATGGAATCAAGACACCAATATACGCCAAGCATTCAGAA
ATTCGACAGTATGGTTCTACCAAGTACTGGCTCGAAAAATTGGTCATGAACGGATGGAGAAATTTATCAAGCAAGTCGGC
TATGGGAATCTTCAAATCGGCACACCTGAGCAAATTGACAGATTTTGGCTAGAAGGGCCTTTGCAAATTACACCCAAACA
ACAGATTGAGTTTCTACAACGTCTGCACCGCAAAGAGTTACCCTTTTCCCAACGTACTTTGGATTTAGTTCAAGACATCA
TGATTTACGAACGTACCCCCAATTATGTATTGCGAGGAAAGACAGGCTGGGCGGCAAGTGTTACCCCGAATATTGGCTGG
TTTGTGGGATATCTGGAACAAAACAATAATGTATATTTCTTTGCTACCAATATTGATATACGCAACAATGATGACGCTGC
TGCCCGAATTGAAGTTACTCGGCGCAGTCTCAAAGCTTTAGGATTGCTGTGA

Upstream 100 bases:

>100_bases
ACAGACTAATCAACCAAACAGAGAAATAGATTTCTGGAACTACAAACACCATTGCTGTATTATCACTGGTTTGTAAATCA
GTTTTGTAGGAAAGATCGTT

Downstream 100 bases:

>100_bases
ATCAATTCAAAATTCAAAATTCAATACAGCCCCAAACGCTTGTCCTGTCTTGATTTTGAATTTTGTACCCTACGGGGAAG
CAAGCTACGCGGTAGCGTAG

Product: beta-lactamase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSRNRRMSLAMIVAMTTLVPFLTISNFRDMPGHSQEIQTPAIPVNVNLGRSFNQLGIKGSILIYDRNNKKFYEHNAARNS
QSFLPASTFKIFNSLVALETGVISNDVAILTWDGMQRQFPTWNQDTNIRQAFRNSTVWFYQVLARKIGHERMEKFIKQVG
YGNLQIGTPEQIDRFWLEGPLQITPKQQIEFLQRLHRKELPFSQRTLDLVQDIMIYERTPNYVLRGKTGWAASVTPNIGW
FVGYLEQNNNVYFFATNIDIRNNDDAAARIEVTRRSLKALGLL

Sequences:

>Translated_283_residues
MSRNRRMSLAMIVAMTTLVPFLTISNFRDMPGHSQEIQTPAIPVNVNLGRSFNQLGIKGSILIYDRNNKKFYEHNAARNS
QSFLPASTFKIFNSLVALETGVISNDVAILTWDGMQRQFPTWNQDTNIRQAFRNSTVWFYQVLARKIGHERMEKFIKQVG
YGNLQIGTPEQIDRFWLEGPLQITPKQQIEFLQRLHRKELPFSQRTLDLVQDIMIYERTPNYVLRGKTGWAASVTPNIGW
FVGYLEQNNNVYFFATNIDIRNNDDAAARIEVTRRSLKALGLL
>Mature_282_residues
SRNRRMSLAMIVAMTTLVPFLTISNFRDMPGHSQEIQTPAIPVNVNLGRSFNQLGIKGSILIYDRNNKKFYEHNAARNSQ
SFLPASTFKIFNSLVALETGVISNDVAILTWDGMQRQFPTWNQDTNIRQAFRNSTVWFYQVLARKIGHERMEKFIKQVGY
GNLQIGTPEQIDRFWLEGPLQITPKQQIEFLQRLHRKELPFSQRTLDLVQDIMIYERTPNYVLRGKTGWAASVTPNIGWF
VGYLEQNNNVYFFATNIDIRNNDDAAARIEVTRRSLKALGLL

Specific function: This oxacillinase hydrolyzes methicillin [H]

COG id: COG2602

COG function: function code V; Beta-lactamase class D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-D beta-lactamase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR002137
- InterPro:   IPR001460 [H]

Pfam domain/function: PF00905 Transpeptidase [H]

EC number: =3.5.2.6 [H]

Molecular weight: Translated: 32692; Mature: 32561

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNRRMSLAMIVAMTTLVPFLTISNFRDMPGHSQEIQTPAIPVNVNLGRSFNQLGIKGS
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHCCCCEE
ILIYDRNNKKFYEHNAARNSQSFLPASTFKIFNSLVALETGVISNDVAILTWDGMQRQFP
EEEEECCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCCCC
TWNQDTNIRQAFRNSTVWFYQVLARKIGHERMEKFIKQVGYGNLQIGTPEQIDRFWLEGP
CCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCC
LQITPKQQIEFLQRLHRKELPFSQRTLDLVQDIMIYERTPNYVLRGKTGWAASVTPNIGW
EEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCEEECCCCCCE
FVGYLEQNNNVYFFATNIDIRNNDDAAARIEVTRRSLKALGLL
EEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRNRRMSLAMIVAMTTLVPFLTISNFRDMPGHSQEIQTPAIPVNVNLGRSFNQLGIKGS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHCCCCEE
ILIYDRNNKKFYEHNAARNSQSFLPASTFKIFNSLVALETGVISNDVAILTWDGMQRQFP
EEEEECCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCCCC
TWNQDTNIRQAFRNSTVWFYQVLARKIGHERMEKFIKQVGYGNLQIGTPEQIDRFWLEGP
CCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCC
LQITPKQQIEFLQRLHRKELPFSQRTLDLVQDIMIYERTPNYVLRGKTGWAASVTPNIGW
EEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCEEECCCCCCE
FVGYLEQNNNVYFFATNIDIRNNDDAAARIEVTRRSLKALGLL
EEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1495394 [H]