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The map label for this gene is yciM [C]

Identifier: 17229915

GI number: 17229915

Start: 2906230

End: 2908329

Strand: Reverse

Name: yciM [C]

Synonym: all2423

Alternate gene names: 17229915

Gene position: 2908329-2906230 (Counterclockwise)

Preceding gene: 17229916

Following gene: 17229914

Centisome position: 45.35

GC content: 42.71

Gene sequence:

>2100_bases
GTGGAGGCGTTGGTTAGGTGTTTACGTTCTGGGCAATTTTTACTGATTATTGACAACCTGGAAAGTGTATTACAACCTGA
TAGACAGTGGGGAAGTTTATTTTACGGCGACTTTTTCCAAGCATGGATCGAATCTGGTGGTAATAGTAAGGTGCTAGTCA
CCACCAGGGAAAGACCAGAATTAAAAGGCTTTGAGTGGTTAACCCTGAAAGGTTTACAAGTAGATGAAGGGGTAGCACTG
TTAACCGCATTGGGCATTAAAGGAAATTTAGGGGAGTTTGTGGAATTAGTCGATGGACATCCCCTATTGTTGAGATTAGT
AGCAGATTTATTAAAGGAAGAATACCCCCAAGACCCGGATTTAAGTAGATTAGCAGATTTAGGCTTAGGGAATTTGCAGC
AGTTGTTGACAGATTCTCAAGTGGTAGGTGTGCATCGCCGGGAAAATGTGGGGATGGTGTTGGTGTTGGATGCCAGTTTT
CATAGATTGAGTGAGTTACAAAAGGCGTTATTGCTGAATATTAGTGTGTATCGTGGTGCGGTTGACAGTGCAGCAGCCGT
GGCTATGTTGCCAGGAAATTCAGCAGCAGAGATTGAGAAAGAATTAAGGAATATTGTTAAGCGTTCTTTGTTGGTAGAAA
AACTCAATGGTAAGCGGCGATTTGAGTTTCAGCCTGTGGTGTTGGAGTATGTGCGGTATAAAGCCGGCGATCAGAGTGAG
GCGCATCAACGAGCCATTGATTATTATCGCTCAGTTGCTAAACAACCACCTTGGACAACAAAAGACGATGTTAGAGAATA
TTTGGAAATATTTGATCACTTTTATCAGTTGCAAGATTATGACTCTGCCTTTGATAACATTCGAGTCTGTAGTAAGTTTT
TAGGCCTGTGCGGTTTTTTCGTAGACAAAGTAGAATTATATGGTCAGTTAATCAGTAAATGGAAAGAAATTGGTGAGCGA
GAAAATTGGAATTATGGGGCTTCTCTCACTGCATTAGGCAATGCTTACCGTTACCTGGGAGAGTACCAACGGGCGATTGA
GTTGTTCCAGCAGTCTTTGGAAATATTTAGGGATATAGGCGATCGCAACGGCGTAAGTAATTCCTTAATCGGTTTAGGCA
ATACTTACAACTCCGTGGGAGAGTACCAACGGGCGATTGAGTTGTTCCAGCAGTCTTTGGAAATATCAAGAGATATAGGC
GATCGCAATGGCGTAGGTGGTTCCTTAATGGGTTTAGGCAATGCTTACAACTCCGTGGGAGAGTACCAACGGGCGATTGA
GTTGTTCCAGCAGTCTTTGGAAATATCGAGAGATATAGGCGATCGCAATGGCGTAGGTAATTCCTTAATTGGTTTAGGCA
ATGCTTACCATTCCTTGGGAGAGTACCAACGGGCAATTGAGTTCCGCCAGCAGTCTTTGGAAATCTTTAGGGACATGGGT
GATCGCAATGGCGTAAGTATATCCTTAAACAATTTAGGCAATACTTACTACTTCCTGGGAGAGTACCAACGGGCGATTGA
GTTCCACCAGCAGTCTTTGGAAATATCAAGGGATATAGGTGATTGCAATGGTGTAGGTAGATCTTTAAACAATTTAGGCA
ATGCTTACTACTCTCTGGGAAAGTACCAACAGGCGATTGAGTTCCACCAGCAGTCTTTGGAAATCAAAAGGGACATAGGC
GATCGCAATGGCGTAGGTACATCCTTAAACAATTTAGGTACTGCTTACTCCTCCCTGGGAAAGTACCAACGGGCGATTGA
GTTGTTCCAGCAGTCTTTGGAAATTAAAAGGGACATAGGCGATCGCAATGGCGTAGGTACATCCTTAATGAATTTGAGCA
ATGCTTATTATCGGTGTGGCAAAATTCGAGAAGCATTTGCAGTCTGGCATCAAGCCGAGTCGATTTTCCAAGAACTTCAG
CTTCCTTTTGAAGCTATGCCTTATCCTCAGTGGCTAAAATCATTAATAAAATTCGCTCAACGTGGTTGGTTTCAGTTTAT
TTTGTGTTTCATTTTTGGGCTGATAGCCTTTCCCTTTGCCCTTGTATGGTTGATTCTGCTATTTTTATGGCCTTCAATCA
GTTCCCAATTTAGAAGATAA

Upstream 100 bases:

>100_bases
GTTTTGGGCTGATGTCAGTAATGGTGCAAGTTTTAGCGATTTAGCCAGACAAGTATTAACAGAATTTGGCTTTTATGTAC
CAGAACAAGAAACGCAGTTA

Downstream 100 bases:

>100_bases
AACTGATATCTTCTGTTTGTGGTTTTTGGGCATGGTTGCGTCGCTTGTGGCGTTGGGTTCGCTCTTGGTTTCGGCGGTGA
TTTTGTTTCATGCAGCGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide Repeat Family; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide TPR_2 Repeat Protein; NB-ARC Domain-Containing Protein; Tetratricopeptide Repeat Family Protein; SARP Family Transcriptional Regulator; Diguanylate Cyclase/Serine/Threonine Protein Kinase; TPR Domain-Containing Protein; Histidine Kinase; NB-ARC Domain Protein; Tetratricopeptide Repeat-Containing Protein; Transcriptional Activator Domain-Containing Protein; Tetratricopeptide Protein; Kinesin Light Chain; Tetratricopeptide Domain-Containing Protein; WD-40 Repeat-Containing Protein; Nb-Arc; Regulatory Protein AfsR; LOW QUALITY PROTEIN Regulatory Protein AfsR; SLEI Family; TPR Domain Family Protein; XRE Family Transcriptional Regulator; Serine/Threonine Protein Kinase With TPR Repeats; Transcriptional Regulator SARP Family; Transcriptional Activator Domain Protein; Helix-Turn-Helix Domain Protein; XRE Family Transcriptional Regulator With TPR Repeat Domain; TPR Repeat-Containing Adenylate/Guanylate Cyclase; Nb-Arc Domain Protein; Signal Transduction Protein; Peptidase Domain-Containing Protein; ATPase Containing TPR Repeat Domain; Ankyrin And Tpr Repeat Domain Protein; Signal Transduction Histidine Kinase; Transcriptional Activator Domain Containing Protein; Peptidase-Like; Fis Family Transcriptional Regulator; Beta-Lactamase Domain-Containing Protein

Number of amino acids: Translated: 699; Mature: 699

Protein sequence:

>699_residues
MEALVRCLRSGQFLLIIDNLESVLQPDRQWGSLFYGDFFQAWIESGGNSKVLVTTRERPELKGFEWLTLKGLQVDEGVAL
LTALGIKGNLGEFVELVDGHPLLLRLVADLLKEEYPQDPDLSRLADLGLGNLQQLLTDSQVVGVHRRENVGMVLVLDASF
HRLSELQKALLLNISVYRGAVDSAAAVAMLPGNSAAEIEKELRNIVKRSLLVEKLNGKRRFEFQPVVLEYVRYKAGDQSE
AHQRAIDYYRSVAKQPPWTTKDDVREYLEIFDHFYQLQDYDSAFDNIRVCSKFLGLCGFFVDKVELYGQLISKWKEIGER
ENWNYGASLTALGNAYRYLGEYQRAIELFQQSLEIFRDIGDRNGVSNSLIGLGNTYNSVGEYQRAIELFQQSLEISRDIG
DRNGVGGSLMGLGNAYNSVGEYQRAIELFQQSLEISRDIGDRNGVGNSLIGLGNAYHSLGEYQRAIEFRQQSLEIFRDMG
DRNGVSISLNNLGNTYYFLGEYQRAIEFHQQSLEISRDIGDCNGVGRSLNNLGNAYYSLGKYQQAIEFHQQSLEIKRDIG
DRNGVGTSLNNLGTAYSSLGKYQRAIELFQQSLEIKRDIGDRNGVGTSLMNLSNAYYRCGKIREAFAVWHQAESIFQELQ
LPFEAMPYPQWLKSLIKFAQRGWFQFILCFIFGLIAFPFALVWLILLFLWPSISSQFRR

Sequences:

>Translated_699_residues
MEALVRCLRSGQFLLIIDNLESVLQPDRQWGSLFYGDFFQAWIESGGNSKVLVTTRERPELKGFEWLTLKGLQVDEGVAL
LTALGIKGNLGEFVELVDGHPLLLRLVADLLKEEYPQDPDLSRLADLGLGNLQQLLTDSQVVGVHRRENVGMVLVLDASF
HRLSELQKALLLNISVYRGAVDSAAAVAMLPGNSAAEIEKELRNIVKRSLLVEKLNGKRRFEFQPVVLEYVRYKAGDQSE
AHQRAIDYYRSVAKQPPWTTKDDVREYLEIFDHFYQLQDYDSAFDNIRVCSKFLGLCGFFVDKVELYGQLISKWKEIGER
ENWNYGASLTALGNAYRYLGEYQRAIELFQQSLEIFRDIGDRNGVSNSLIGLGNTYNSVGEYQRAIELFQQSLEISRDIG
DRNGVGGSLMGLGNAYNSVGEYQRAIELFQQSLEISRDIGDRNGVGNSLIGLGNAYHSLGEYQRAIEFRQQSLEIFRDMG
DRNGVSISLNNLGNTYYFLGEYQRAIEFHQQSLEISRDIGDCNGVGRSLNNLGNAYYSLGKYQQAIEFHQQSLEIKRDIG
DRNGVGTSLNNLGTAYSSLGKYQRAIELFQQSLEIKRDIGDRNGVGTSLMNLSNAYYRCGKIREAFAVWHQAESIFQELQ
LPFEAMPYPQWLKSLIKFAQRGWFQFILCFIFGLIAFPFALVWLILLFLWPSISSQFRR
>Mature_699_residues
MEALVRCLRSGQFLLIIDNLESVLQPDRQWGSLFYGDFFQAWIESGGNSKVLVTTRERPELKGFEWLTLKGLQVDEGVAL
LTALGIKGNLGEFVELVDGHPLLLRLVADLLKEEYPQDPDLSRLADLGLGNLQQLLTDSQVVGVHRRENVGMVLVLDASF
HRLSELQKALLLNISVYRGAVDSAAAVAMLPGNSAAEIEKELRNIVKRSLLVEKLNGKRRFEFQPVVLEYVRYKAGDQSE
AHQRAIDYYRSVAKQPPWTTKDDVREYLEIFDHFYQLQDYDSAFDNIRVCSKFLGLCGFFVDKVELYGQLISKWKEIGER
ENWNYGASLTALGNAYRYLGEYQRAIELFQQSLEIFRDIGDRNGVSNSLIGLGNTYNSVGEYQRAIELFQQSLEISRDIG
DRNGVGGSLMGLGNAYNSVGEYQRAIELFQQSLEISRDIGDRNGVGNSLIGLGNAYHSLGEYQRAIEFRQQSLEIFRDMG
DRNGVSISLNNLGNTYYFLGEYQRAIEFHQQSLEISRDIGDCNGVGRSLNNLGNAYYSLGKYQQAIEFHQQSLEIKRDIG
DRNGVGTSLNNLGTAYSSLGKYQRAIELFQQSLEIKRDIGDRNGVGTSLMNLSNAYYRCGKIREAFAVWHQAESIFQELQ
LPFEAMPYPQWLKSLIKFAQRGWFQFILCFIFGLIAFPFALVWLILLFLWPSISSQFRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI164519122, Length=319, Percent_Identity=33.2288401253918, Blast_Score=185, Evalue=1e-46,
Organism=Homo sapiens, GI224548927, Length=321, Percent_Identity=31.1526479750779, Blast_Score=172, Evalue=1e-42,
Organism=Homo sapiens, GI224548925, Length=321, Percent_Identity=31.1526479750779, Blast_Score=171, Evalue=3e-42,
Organism=Homo sapiens, GI224028289, Length=314, Percent_Identity=28.0254777070064, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI34304360, Length=275, Percent_Identity=27.6363636363636, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI282165719, Length=312, Percent_Identity=25.6410256410256, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI15619013, Length=309, Percent_Identity=20.7119741100324, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI33620730, Length=192, Percent_Identity=30.2083333333333, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI110735431, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI194306559, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25147165, Length=281, Percent_Identity=24.1992882562278, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25147167, Length=292, Percent_Identity=23.2876712328767, Blast_Score=96, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI71984527, Length=285, Percent_Identity=24.9122807017544, Blast_Score=73, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71984517, Length=285, Percent_Identity=24.9122807017544, Blast_Score=72, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71984535, Length=274, Percent_Identity=25.5474452554745, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71984524, Length=272, Percent_Identity=25.3676470588235, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650658, Length=300, Percent_Identity=34, Blast_Score=188, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24660950, Length=314, Percent_Identity=28.0254777070064, Blast_Score=157, Evalue=3e-38,
Organism=Drosophila melanogaster, GI17647555, Length=194, Percent_Identity=30.9278350515464, Blast_Score=66, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79414; Mature: 79414

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALVRCLRSGQFLLIIDNLESVLQPDRQWGSLFYGDFFQAWIESGGNSKVLVTTRERPE
CHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
LKGFEWLTLKGLQVDEGVALLTALGIKGNLGEFVELVDGHPLLLRLVADLLKEEYPQDPD
CCCCCEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
LSRLADLGLGNLQQLLTDSQVVGVHRRENVGMVLVLDASFHRLSELQKALLLNISVYRGA
HHHHHHCCCHHHHHHHCCCHHHCCEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
VDSAAAVAMLPGNSAAEIEKELRNIVKRSLLVEKLNGKRRFEFQPVVLEYVRYKAGDQSE
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHH
AHQRAIDYYRSVAKQPPWTTKDDVREYLEIFDHFYQLQDYDSAFDNIRVCSKFLGLCGFF
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDKVELYGQLISKWKEIGERENWNYGASLTALGNAYRYLGEYQRAIELFQQSLEIFRDIG
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRNGVSNSLIGLGNTYNSVGEYQRAIELFQQSLEISRDIGDRNGVGGSLMGLGNAYNSVG
CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHH
EYQRAIELFQQSLEISRDIGDRNGVGNSLIGLGNAYHSLGEYQRAIEFRQQSLEIFRDMG
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRNGVSISLNNLGNTYYFLGEYQRAIEFHQQSLEISRDIGDCNGVGRSLNNLGNAYYSLG
CCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KYQQAIEFHQQSLEIKRDIGDRNGVGTSLNNLGTAYSSLGKYQRAIELFQQSLEIKRDIG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRNGVGTSLMNLSNAYYRCGKIREAFAVWHQAESIFQELQLPFEAMPYPQWLKSLIKFAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHH
RGWFQFILCFIFGLIAFPFALVWLILLFLWPSISSQFRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEALVRCLRSGQFLLIIDNLESVLQPDRQWGSLFYGDFFQAWIESGGNSKVLVTTRERPE
CHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
LKGFEWLTLKGLQVDEGVALLTALGIKGNLGEFVELVDGHPLLLRLVADLLKEEYPQDPD
CCCCCEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
LSRLADLGLGNLQQLLTDSQVVGVHRRENVGMVLVLDASFHRLSELQKALLLNISVYRGA
HHHHHHCCCHHHHHHHCCCHHHCCEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
VDSAAAVAMLPGNSAAEIEKELRNIVKRSLLVEKLNGKRRFEFQPVVLEYVRYKAGDQSE
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHH
AHQRAIDYYRSVAKQPPWTTKDDVREYLEIFDHFYQLQDYDSAFDNIRVCSKFLGLCGFF
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDKVELYGQLISKWKEIGERENWNYGASLTALGNAYRYLGEYQRAIELFQQSLEIFRDIG
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRNGVSNSLIGLGNTYNSVGEYQRAIELFQQSLEISRDIGDRNGVGGSLMGLGNAYNSVG
CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHH
EYQRAIELFQQSLEISRDIGDRNGVGNSLIGLGNAYHSLGEYQRAIEFRQQSLEIFRDMG
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRNGVSISLNNLGNTYYFLGEYQRAIEFHQQSLEISRDIGDCNGVGRSLNNLGNAYYSLG
CCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KYQQAIEFHQQSLEIKRDIGDRNGVGTSLNNLGTAYSSLGKYQRAIELFQQSLEIKRDIG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRNGVGTSLMNLSNAYYRCGKIREAFAVWHQAESIFQELQLPFEAMPYPQWLKSLIKFAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHH
RGWFQFILCFIFGLIAFPFALVWLILLFLWPSISSQFRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA