| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is alaS [H]
Identifier: 17229910
GI number: 17229910
Start: 2901472
End: 2904114
Strand: Direct
Name: alaS [H]
Synonym: alr2418
Alternate gene names: 17229910
Gene position: 2901472-2904114 (Clockwise)
Preceding gene: 17229906
Following gene: 17229918
Centisome position: 45.24
GC content: 48.24
Gene sequence:
>2643_bases ATGTCTTCAAACCCGCAGCACCTGAGTGGTAACGAAATTCGCACCCGATTCCTTGACTTCTATGCCCAAAGGGGACACCA AATTTTGGCTAGTGCTTCCCTTGTGCCGGAAGATCCAACCGTGCTGCTGACGATCGCGGGGATGCTACCATTTAAGCCAA TATTCCTGGGGCAGCGCACACCAGAATTTAAACGGGCGACGACTTCGCAAAAGTGCATCCGTACTAACGATATCGAGAAT GTAGGACGCACCAAACGACATCAAACCTTCTTTGAAATGCTGGGTAACTTCAGCTTTGGTGACTATTTTAAAGAACAAGC GATCGCCTGGGGCTGGGAAATCTCCACAGAAGTTTTTGGCTTACCCAAGGAACGCTTAGTAGTCAGCGTCTTTGAGGAAG ATGATGAAGCCTACGCAATTTGGCGCGATCAAATTGGTGTCACGGAAGCCAGAATCAAGCGCATGGGTGCAGATGATAAT TTCTGGGTATCTGGCCCCACTGGCCCTTGTGGCCCTTGTTCGGAGATTTATTACGACTTCCACCCAGAAAGGGGCGACGA CAATATAGATTTAGAAGACGATACCCGGTTTATCGAGTTTTATAACTTGGTATTCATGCAATACAACCGGGATGCGTCGG GTAATTTAACACCATTGCAAAACAAAAATATTGATACCGGGATGGGTTTGGAGAGAATCACCCAAATCCTGCAACGAGTA CCGAATAATTACGAAACTGACTTAATTTTCCCGATTATCGAGACAGCAGCCAAAATTGCTGGCATTGACTACCATAGCAG CGATGAGAGTACTAAAGTTTCCCTCAAGGTAATTGGTGATCATGTCCGTTCCGTTGTCCACATGATTGCTGATGAAATCC GCGCCTCCAATGTGGGACGGGGTTATGTGTTGCGGCGTTTAATTCGGCGGGTGGTGCGTCATGGACGATTGATTGGGATT AGCGGGGAGTTTATCAACCAAGTAGCCGAAACTGCGATCGCTCTTTCCGAATCAGCATACCCCAACGTCCGCCAACGGGA AACCGTCATTAAAGCAGAACTGGAACGGGAAGAAGCTAATTTCCTTAAAACCCTTGATAGAGGGGAGAAACTCCTAGCGG AAATCATCGCTGAGGTGAAAAAACAAGGTAAAACCGTGATTAGTGGTAAAGATGCTTTCACTCTCTACGATACCCACGGT TTCCCCCTCGAACTCACCCAAGAAATTGCTGAAGAAAATAACCTGACAGTTGATGTTGAGGGATTCCAAAAACAAATGGA AATCCAACAACAAGGAGGCCGAGGCGCCCACGAAACCATCGATTTAACGGTGCAAGGTTCCCTCGACAAATTAGCAGAAC ACATCCACGCTACCGAGTTCATCGGTTATAGCCAAGCTACAGCAACGGCGAAAGTGGAAGTTTTGTTAGTCGATGGTGTT GTTCAAGAAGAAGCAGAAGCGGGAACAGAAGTACAGATTGTCCTTGACGAAACCCCATTTTATGCAGAATCCGGGGGACA AATCGGCGATCGCGGTTATATCTCCGGTGATGGTATCGTTGTTCAGGTGGAAGATGTCAAAAAAGAATCTGATTTCTTCG TGCATTTCGGACGCATCGAACGCGGAACCCTGCGCGTAGGCGATAACGTCACCGCCCAAATAGACCGCGCTGGTCGTCGT CGCGCCCAAGCTAACCATACTGCAACCCATCTATTACAAGCAGCCTTAAAGACCATCGTTGATGGTGGCATATCGCAAGC CGGTTCTCTCGTCTCTTTCGACAGATTGCGCTTTGACTTCAACTCTCCCCGTGGCTTGACAGTAGAGGAAATCCAACAAG TTGAAGAACAAATCAACACCTGGATTGCTGAAGCCCACTCAGCCAAAATCGAACTATTACCTTTAGCTGAGGCGAAAGCT AGAGGGGCGGTAGCGATGTTTGGGGAAAAATACGGTGATGAAGTCCGAGTCATAGATTTCCCTGGTGTATCTATGGAATT ATGCGGTGGTACGCACGTAAGTAATACTGCGGAGATTGGCGTATTTAAGATTATTTCTGAAGCGGGTGTTGCGTCTGGTG TGCGGCGGATTGAAGCCGTTTCCGGCCTGGCTGTGCTGGATTACTTAAATGTGCGAGATAAAGTAGTTAAAGATTTAAGC GATCGCTTTAAAGTCAAACCCGAAGAACTACCAGAGAGAATCACCACTCTGCAAAATGAACTGAGAACTACAGAGAAGCA ACTAGAAACCCTGAAGGGACAATTGGCGATCGCCAAATCCGACAGCCTACTACAAACAGCAGACACTTGCGGGGACTATA AAATCATAGTTGCCCAATTGGAAGGCGTAGACCCCGAATCCTTGAAAAGTGCAGCCGAACGCCTACTACAAAAAATCGGT AACGGTGCAGTGGTCTTGGGTTCCGTTCCCGAAGCCGACAAAGTTAGCTTAGTTGCAGCCTTCAGCCCAGAAGTTAACAA AAAAGGCTTACAGGCGGGTAAATTCATTGGGGCGATCGCCAAAATTTGCGGCGGCGGCGGCGGCGGTAGACCAAACCTCG CCCAAGCCGGCGGACGCGATGCGAGTAAACTACCAGCAGCCCTGGAACAAGCCCAGAGTGAGTTAAAATCGGCCTTAGGT TAG
Upstream 100 bases:
>100_bases TTTTATGTATTGGGAACTGGGGAATGGGATAAAAGAAATAGTACTAATCCCTAATCCCCATTCCCTAGTCCCCCATTAAA CTACTTTTTCCTTTCCTCCC
Downstream 100 bases:
>100_bases GGCGTGAGAAATTAAGTTATGAGGGGTGTACTTGCAAAACCACCCTCATAACCCACGGAGAAAAACTACAGGCTTTTTTA GTTGTGAAAGACACTCAATT
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 880; Mature: 879
Protein sequence:
>880_residues MSSNPQHLSGNEIRTRFLDFYAQRGHQILASASLVPEDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTSQKCIRTNDIEN VGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDN FWVSGPTGPCGPCSEIYYDFHPERGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRV PNNYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVLRRLIRRVVRHGRLIGI SGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFLKTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHG FPLELTQEIAEENNLTVDVEGFQKQMEIQQQGGRGAHETIDLTVQGSLDKLAEHIHATEFIGYSQATATAKVEVLLVDGV VQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGDGIVVQVEDVKKESDFFVHFGRIERGTLRVGDNVTAQIDRAGRR RAQANHTATHLLQAALKTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLAEAKA RGAVAMFGEKYGDEVRVIDFPGVSMELCGGTHVSNTAEIGVFKIISEAGVASGVRRIEAVSGLAVLDYLNVRDKVVKDLS DRFKVKPEELPERITTLQNELRTTEKQLETLKGQLAIAKSDSLLQTADTCGDYKIIVAQLEGVDPESLKSAAERLLQKIG NGAVVLGSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGGGGRPNLAQAGGRDASKLPAALEQAQSELKSALG
Sequences:
>Translated_880_residues MSSNPQHLSGNEIRTRFLDFYAQRGHQILASASLVPEDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTSQKCIRTNDIEN VGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDN FWVSGPTGPCGPCSEIYYDFHPERGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRV PNNYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVLRRLIRRVVRHGRLIGI SGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFLKTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHG FPLELTQEIAEENNLTVDVEGFQKQMEIQQQGGRGAHETIDLTVQGSLDKLAEHIHATEFIGYSQATATAKVEVLLVDGV VQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGDGIVVQVEDVKKESDFFVHFGRIERGTLRVGDNVTAQIDRAGRR RAQANHTATHLLQAALKTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLAEAKA RGAVAMFGEKYGDEVRVIDFPGVSMELCGGTHVSNTAEIGVFKIISEAGVASGVRRIEAVSGLAVLDYLNVRDKVVKDLS DRFKVKPEELPERITTLQNELRTTEKQLETLKGQLAIAKSDSLLQTADTCGDYKIIVAQLEGVDPESLKSAAERLLQKIG NGAVVLGSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGGGGRPNLAQAGGRDASKLPAALEQAQSELKSALG >Mature_879_residues SSNPQHLSGNEIRTRFLDFYAQRGHQILASASLVPEDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTSQKCIRTNDIENV GRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNF WVSGPTGPCGPCSEIYYDFHPERGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVP NNYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVLRRLIRRVVRHGRLIGIS GEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFLKTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGF PLELTQEIAEENNLTVDVEGFQKQMEIQQQGGRGAHETIDLTVQGSLDKLAEHIHATEFIGYSQATATAKVEVLLVDGVV QEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGDGIVVQVEDVKKESDFFVHFGRIERGTLRVGDNVTAQIDRAGRRR AQANHTATHLLQAALKTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLAEAKAR GAVAMFGEKYGDEVRVIDFPGVSMELCGGTHVSNTAEIGVFKIISEAGVASGVRRIEAVSGLAVLDYLNVRDKVVKDLSD RFKVKPEELPERITTLQNELRTTEKQLETLKGQLAIAKSDSLLQTADTCGDYKIIVAQLEGVDPESLKSAAERLLQKIGN GAVVLGSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGGGGRPNLAQAGGRDASKLPAALEQAQSELKSALG
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=966, Percent_Identity=36.0248447204969, Blast_Score=515, Evalue=1e-146, Organism=Homo sapiens, GI38569417, Length=768, Percent_Identity=32.9427083333333, Blast_Score=375, Evalue=1e-103, Organism=Homo sapiens, GI217416402, Length=295, Percent_Identity=26.1016949152542, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI13376886, Length=295, Percent_Identity=26.1016949152542, Blast_Score=81, Evalue=6e-15, Organism=Escherichia coli, GI1789048, Length=869, Percent_Identity=44.6490218642117, Blast_Score=714, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=972, Percent_Identity=33.9506172839506, Blast_Score=489, Evalue=1e-138, Organism=Caenorhabditis elegans, GI17536681, Length=745, Percent_Identity=32.4832214765101, Blast_Score=344, Evalue=1e-94, Organism=Saccharomyces cerevisiae, GI6324911, Length=776, Percent_Identity=38.1443298969072, Blast_Score=507, Evalue=1e-144, Organism=Drosophila melanogaster, GI24582809, Length=970, Percent_Identity=34.020618556701, Blast_Score=482, Evalue=1e-136, Organism=Drosophila melanogaster, GI45552267, Length=970, Percent_Identity=34.020618556701, Blast_Score=482, Evalue=1e-136, Organism=Drosophila melanogaster, GI24658214, Length=808, Percent_Identity=29.8267326732673, Blast_Score=309, Evalue=7e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 96723; Mature: 96592
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNPQHLSGNEIRTRFLDFYAQRGHQILASASLVPEDPTVLLTIAGMLPFKPIFLGQRT CCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCCCCEEEEEEECCCCCCEEECCCCC PEFKRATTSQKCIRTNDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFG CHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECHHHHC LPKERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDF CCHHHEEEEEEECCCCEEEEEHHCCCCHHHHHHHCCCCCCEEECCCCCCCCCHHHHHEEC HPERGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRV CCCCCCCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC PNNYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCH GYVLRRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEAN HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH FLKTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLTVDVE HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCEEEEH GFQKQMEIQQQGGRGAHETIDLTVQGSLDKLAEHIHATEFIGYSQATATAKVEVLLVDGV HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCH VQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGDGIVVQVEDVKKESDFFVHFGRIE HHHHHCCCCEEEEEEECCCCEECCCCCCCCCCEECCCCEEEEECCCCCCCCEEEEECCCC RGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAALKTIVDGGISQAGSLVSFDRLRFDF CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEHHEEEEC NSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLAEAKARGAVAMFGEKYGDEVRVIDF CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEEHHHHCCCCEEEEEC PGVSMELCGGTHVSNTAEIGVFKIISEAGVASGVRRIEAVSGLAVLDYLNVRDKVVKDLS CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRFKVKPEELPERITTLQNELRTTEKQLETLKGQLAIAKSDSLLQTADTCGDYKIIVAQL HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCCEEEEEEEE EGVDPESLKSAAERLLQKIGNGAVVLGSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIA CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH KICGGGGGGRPNLAQAGGRDASKLPAALEQAQSELKSALG HHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSNPQHLSGNEIRTRFLDFYAQRGHQILASASLVPEDPTVLLTIAGMLPFKPIFLGQRT CCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCCCCEEEEEEECCCCCCEEECCCCC PEFKRATTSQKCIRTNDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFG CHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECHHHHC LPKERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDF CCHHHEEEEEEECCCCEEEEEHHCCCCHHHHHHHCCCCCCEEECCCCCCCCCHHHHHEEC HPERGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRV CCCCCCCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC PNNYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCH GYVLRRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEAN HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH FLKTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLTVDVE HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCEEEEH GFQKQMEIQQQGGRGAHETIDLTVQGSLDKLAEHIHATEFIGYSQATATAKVEVLLVDGV HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCH VQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGDGIVVQVEDVKKESDFFVHFGRIE HHHHHCCCCEEEEEEECCCCEECCCCCCCCCCEECCCCEEEEECCCCCCCCEEEEECCCC RGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAALKTIVDGGISQAGSLVSFDRLRFDF CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEHHEEEEC NSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLAEAKARGAVAMFGEKYGDEVRVIDF CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEEHHHHCCCCEEEEEC PGVSMELCGGTHVSNTAEIGVFKIISEAGVASGVRRIEAVSGLAVLDYLNVRDKVVKDLS CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRFKVKPEELPERITTLQNELRTTEKQLETLKGQLAIAKSDSLLQTADTCGDYKIIVAQL HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCCEEEEEEEE EGVDPESLKSAAERLLQKIGNGAVVLGSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIA CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH KICGGGGGGRPNLAQAGGRDASKLPAALEQAQSELKSALG HHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA