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The map label for this gene is apcF

Identifier: 17229819

GI number: 17229819

Start: 2806614

End: 2807123

Strand: Reverse

Name: apcF

Synonym: all2327

Alternate gene names: 17229819

Gene position: 2807123-2806614 (Counterclockwise)

Preceding gene: 17229821

Following gene: 17229812

Centisome position: 43.77

GC content: 46.08

Gene sequence:

>510_bases
ATGCGCGATGCAGTAACAAGCTTAATTAAGAATTATGACGTAGCTGGTCGGTATTTTGACCGAAATGCGATCGATACCCT
CAAAGATTATTTTGATAGTGGTACGGCTCGTGTCCAAGCAGCAGCCGCGATTAACTCCAATGCAGCTGCACTGGTCAAAC
AAGCAGGTTCTAAGTTGTTTGAAGAACTGCCAGAGTTAATTCGCCCCGGTGGTAATGCCTACACTACTCGTCGTCTGGCA
GCTTGTTTACGAGATATGGACTACTATCTGCGCTACGCTACTTATGCACTGGTTGCTGGTAATACCAATGTTTTAGATGA
GCGGGTGCTGCAAGGCTTGCGGGAAACTTACAATTCTTTGGGTGTACCCATTGGCCCTACAGTTCGCGGTGTACAAATTC
TCAAGGATTTGGTCAAGGAACAAGTTGCAGGTGCAGGTATTGCCAACACCACTTTTGTTGAGGAGCCATTTGACCATATT
ACTCGTGAATTAAGCGAGCGGGATGTTTAA

Upstream 100 bases:

>100_bases
TTTGTGCCGAATCTATTTTTAATAGCACAAAAATTTACTGGTGCGTAGTGCAACCAAATTAATATCAAACCATAGATAGC
AAAGATTGGGAGAAGAAGGA

Downstream 100 bases:

>100_bases
GAAGGTATGGGGCAAAAGGCAGGAGGTATGATTTACAATCTGTTTTTTGTCTAGTTTTCATTGTCTGGTTGATTTTCAAT
ATCAAAAAACAGATTTTTAA

Product: phycobilisome core component

Products: NA

Alternate protein names: Allophycocyanin subunit B18

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRDAVTSLIKNYDVAGRYFDRNAIDTLKDYFDSGTARVQAAAAINSNAAALVKQAGSKLFEELPELIRPGGNAYTTRRLA
ACLRDMDYYLRYATYALVAGNTNVLDERVLQGLRETYNSLGVPIGPTVRGVQILKDLVKEQVAGAGIANTTFVEEPFDHI
TRELSERDV

Sequences:

>Translated_169_residues
MRDAVTSLIKNYDVAGRYFDRNAIDTLKDYFDSGTARVQAAAAINSNAAALVKQAGSKLFEELPELIRPGGNAYTTRRLA
ACLRDMDYYLRYATYALVAGNTNVLDERVLQGLRETYNSLGVPIGPTVRGVQILKDLVKEQVAGAGIANTTFVEEPFDHI
TRELSERDV
>Mature_169_residues
MRDAVTSLIKNYDVAGRYFDRNAIDTLKDYFDSGTARVQAAAAINSNAAALVKQAGSKLFEELPELIRPGGNAYTTRRLA
ACLRDMDYYLRYATYALVAGNTNVLDERVLQGLRETYNSLGVPIGPTVRGVQILKDLVKEQVAGAGIANTTFVEEPFDHI
TRELSERDV

Specific function: A variant beta-allophycocyanin (AP) which forms a complex with ApcE, a phycobilisome terminal emmiter that influences energy transfer to photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=A minor component of the phycobilisome core

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): APCF_NOSS1 (Q7A2D6)

Other databases:

- EMBL:   BA000019
- RefSeq:   NP_486367.1
- HSSP:   P72505
- ProteinModelPortal:   Q7A2D6
- SMR:   Q7A2D6
- STRING:   Q7A2D6
- GeneID:   1105924
- GenomeReviews:   BA000019_GR
- KEGG:   ana:all2327
- NMPDR:   fig|103690.1.peg.2634
- eggNOG:   NOG11426
- HOGENOM:   HBG635139
- OMA:   LRETYNS
- ProtClustDB:   CLSK893744
- BioCyc:   NSP103690:ALL2327-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081
- TIGRFAMs:   TIGR01337

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 18636; Mature: 18636

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: BINDING 82-82

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAVTSLIKNYDVAGRYFDRNAIDTLKDYFDSGTARVQAAAAINSNAAALVKQAGSKLF
CHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
EELPELIRPGGNAYTTRRLAACLRDMDYYLRYATYALVAGNTNVLDERVLQGLRETYNSL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GVPIGPTVRGVQILKDLVKEQVAGAGIANTTFVEEPFDHITRELSERDV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDAVTSLIKNYDVAGRYFDRNAIDTLKDYFDSGTARVQAAAAINSNAAALVKQAGSKLF
CHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
EELPELIRPGGNAYTTRRLAACLRDMDYYLRYATYALVAGNTNVLDERVLQGLRETYNSL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GVPIGPTVRGVQILKDLVKEQVAGAGIANTTFVEEPFDHITRELSERDV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840