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The map label for this gene is pchR [H]

Identifier: 17229729

GI number: 17229729

Start: 2684304

End: 2685314

Strand: Reverse

Name: pchR [H]

Synonym: all2237

Alternate gene names: 17229729

Gene position: 2685314-2684304 (Counterclockwise)

Preceding gene: 17229730

Following gene: 17229728

Centisome position: 41.87

GC content: 36.8

Gene sequence:

>1011_bases
ATGAGGTGTTTTCTAGGGTGGGGCATGGCGAGTATTATTTCACTGGCAGATTACCAAGAATTGTGGAGAGAACGCAATCA
AAACACTAGACAACCAGACCCATCAGACCCATCTGATATTATTAATATATGCCCTAAACGATTTGGCAGTGGATACGAAC
GTTGGATTGAACTACGGGAAATTAGTTTACTAATTATAGATACTGAATTTCAGCATGATTTAGTTATAGAAAAAAACGTT
TCAGATAGTTTCCTTGATGGTTTGGAATTTGGATTTCACCTATTAGGGCATTGGAATAATATTAATGCCGGAAAAAATTT
CTTTCAAAGTGGTGCTTTCCACCAGAATAAGGAATCAGAATTTTTGCGATCGCAACGACTATTAAAAGTAGATATACATC
CCGAATCCCCTGAATTAATTCAGAGTTTTATGACAGGTGGCTTAAATTCTATCTCGCCGCAAATCCTACAAAAGCTCATC
AAAACCAGTCAAGAGTCTTATTTTCAAATTGATCATACCACTCCAGAAATGCGCGTTGCTCTGGAACATATTATCAATTG
TCCATTTATAGGTTTAACCAAAAAAATTTATTTAGAGAGTAAATGTTTAGAGTTAATTGCCTTGAAACTGGAACAATTAG
CCACCAAGGAAAATAATTCTAAAACAACCTCTACCTTAAAGGAAGATGATATCGATAGAATTCATTATGCCAAAGAAATC
TTAACTCAAAATCTCGATAATCCCCCTTCTTTACTAGAACTAGCTAGACAAGTAGGATTAAACGACTACAAACTCAAACT
GGGCTTTCGCCAAGTCTTGGGTACAACTGCATTTAGCTACTTATACCAACAACGGATGGAAAAAGCACGCCTATTACTTT
TAGAAGGTCAAATGAATGTCAAAGAAGTAGCGCGTGCTGTTGGCTACGCCAATCAAAGTCGCTTTGCTACAGCTTTTCGT
AAACAGTTCGGCACAAATCCTAAAACCTATGATTTGTTACTGAGAGCTTGA

Upstream 100 bases:

>100_bases
CACCAACTATCCGAACTCTAGACAAGATTCTGACACTCTGATAGACTTACTTCAAAACTATTTGAGAAAGTTTATCTATA
AGTAGTGTCAAGTAATTGAG

Downstream 100 bases:

>100_bases
AGATTAGCCAATATACAGCTATTTGCTATCAGAGGATGGGAAAAATCCGTTTGAGGCGCAAAAAAATCCGTTTGAGGTTC
AATCAGGTCTTCAAAATCAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MRCFLGWGMASIISLADYQELWRERNQNTRQPDPSDPSDIINICPKRFGSGYERWIELREISLLIIDTEFQHDLVIEKNV
SDSFLDGLEFGFHLLGHWNNINAGKNFFQSGAFHQNKESEFLRSQRLLKVDIHPESPELIQSFMTGGLNSISPQILQKLI
KTSQESYFQIDHTTPEMRVALEHIINCPFIGLTKKIYLESKCLELIALKLEQLATKENNSKTTSTLKEDDIDRIHYAKEI
LTQNLDNPPSLLELARQVGLNDYKLKLGFRQVLGTTAFSYLYQQRMEKARLLLLEGQMNVKEVARAVGYANQSRFATAFR
KQFGTNPKTYDLLLRA

Sequences:

>Translated_336_residues
MRCFLGWGMASIISLADYQELWRERNQNTRQPDPSDPSDIINICPKRFGSGYERWIELREISLLIIDTEFQHDLVIEKNV
SDSFLDGLEFGFHLLGHWNNINAGKNFFQSGAFHQNKESEFLRSQRLLKVDIHPESPELIQSFMTGGLNSISPQILQKLI
KTSQESYFQIDHTTPEMRVALEHIINCPFIGLTKKIYLESKCLELIALKLEQLATKENNSKTTSTLKEDDIDRIHYAKEI
LTQNLDNPPSLLELARQVGLNDYKLKLGFRQVLGTTAFSYLYQQRMEKARLLLLEGQMNVKEVARAVGYANQSRFATAFR
KQFGTNPKTYDLLLRA
>Mature_336_residues
MRCFLGWGMASIISLADYQELWRERNQNTRQPDPSDPSDIINICPKRFGSGYERWIELREISLLIIDTEFQHDLVIEKNV
SDSFLDGLEFGFHLLGHWNNINAGKNFFQSGAFHQNKESEFLRSQRLLKVDIHPESPELIQSFMTGGLNSISPQILQKLI
KTSQESYFQIDHTTPEMRVALEHIINCPFIGLTKKIYLESKCLELIALKLEQLATKENNSKTTSTLKEDDIDRIHYAKEI
LTQNLDNPPSLLELARQVGLNDYKLKLGFRQVLGTTAFSYLYQQRMEKARLLLLEGQMNVKEVARAVGYANQSRFATAFR
KQFGTNPKTYDLLLRA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38751; Mature: 38751

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCFLGWGMASIISLADYQELWRERNQNTRQPDPSDPSDIINICPKRFGSGYERWIELRE
CCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
ISLLIIDTEFQHDLVIEKNVSDSFLDGLEFGFHLLGHWNNINAGKNFFQSGAFHQNKESE
EEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHH
FLRSQRLLKVDIHPESPELIQSFMTGGLNSISPQILQKLIKTSQESYFQIDHTTPEMRVA
HHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHEEEECCCCHHHHHH
LEHIINCPFIGLTKKIYLESKCLELIALKLEQLATKENNSKTTSTLKEDDIDRIHYAKEI
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTQNLDNPPSLLELARQVGLNDYKLKLGFRQVLGTTAFSYLYQQRMEKARLLLLEGQMNV
HHCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
KEVARAVGYANQSRFATAFRKQFGTNPKTYDLLLRA
HHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHEECC
>Mature Secondary Structure
MRCFLGWGMASIISLADYQELWRERNQNTRQPDPSDPSDIINICPKRFGSGYERWIELRE
CCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
ISLLIIDTEFQHDLVIEKNVSDSFLDGLEFGFHLLGHWNNINAGKNFFQSGAFHQNKESE
EEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHH
FLRSQRLLKVDIHPESPELIQSFMTGGLNSISPQILQKLIKTSQESYFQIDHTTPEMRVA
HHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHEEEECCCCHHHHHH
LEHIINCPFIGLTKKIYLESKCLELIALKLEQLATKENNSKTTSTLKEDDIDRIHYAKEI
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTQNLDNPPSLLELARQVGLNDYKLKLGFRQVLGTTAFSYLYQQRMEKARLLLLEGQMNV
HHCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
KEVARAVGYANQSRFATAFRKQFGTNPKTYDLLLRA
HHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]