Click here to switch to the map view.

The map label for this gene is patA [H]

Identifier: 17229657

GI number: 17229657

Start: 2599675

End: 2600718

Strand: Reverse

Name: patA [H]

Synonym: all2165

Alternate gene names: 17229657

Gene position: 2600718-2599675 (Counterclockwise)

Preceding gene: 17229658

Following gene: 17229656

Centisome position: 40.55

GC content: 37.84

Gene sequence:

>1044_bases
ATGAGTACAACTCCTATAAATAACTACAGGTTAAATCATAAACTACATCCCCTATCCCTCTTAGCTCAACTCACCAGTCG
TCATGCTACAGGCTGCTTACGCGTATTTACAGACACCACATCTTGGACAATTAATTTAGAAGCAGGTAAACTTACTTACG
CTTCCTACTCAGATAAATTATTTGAGCGTTTTGATAATCAACTGCGGCGCTTAAGTCAAAAAATACCTACTCTGAACAGC
GCTACCCGTGTACAAATGCGGTTGATGTTTGAACCCAAGGGTGAAGATCAATCCATGTTATATGCAGATTATCAGGCGAT
TTGTTGGCTTGTAAATCAGAACCATATTAACCCCAAACAAGCCGCCATCTTGATAGAAGAACTAGCAAAGGAAGTAATAG
AGACATTTTTAGTCATCAAACAGGGAAGCTATGAGTTTTTCCCTGACATTCTTTGGGAAGAAATGCCAAAATTCTGTTAT
TTAGATTTGCGTTTATTAGTTGAATATTGCCAAAAACAATTACGACAACGCCAACCTACACCACCATCTGTGAATACGGG
TGGTGGTTCGCAAGTTTTGCCATCAACTAGACCCGCCTCATCCCCATCATCAAACCAAAATCATCCTGAGAATAGCGTAA
ACTCTCAGCCAATTAATCCTCCATCGCTAGTTAGAAAAACTTTATATACTATTGCTTGTATTGATGATAGTCAGACAGTC
TTAAATTCCATCAGAAGTTTTCTAGATGAGAATGTATTTACAGTGGTGACTATTAATGATCCTGTGAAAGCTTTAATGCA
AGTTCTGCGGAGTAAACCAGACTTAATTTTACTCGATGTGACAATGCCCAATTTAGACGGATATGAATTATGTTCCCTAT
TACGGAGACATTCAGCCTTTAAAAATACGCCTATTATTATGGTGACTGGTAGAACAGGATTTGTTGATAGGGCTAAAGCA
AAAATGGTCAGGTCTTCAGGCTATTTAACTAAGCCTTTTGACCAGTCGGAATTATTAAAAATGGTGTTTAAACATATTAC
TTAA

Upstream 100 bases:

>100_bases
TTATCACCTACTTAGTTAATCAATTCATGATAGGACTTGTGGCGAAGCTTCCCCATCAACTAAGTTGACACCTATGGAAT
TTATCTAAAGTAAAAGCAAA

Downstream 100 bases:

>100_bases
GGCAGGAGATTGAAGAGTGAGTATTACCTTAGTCGGCAAAATTTTGATTGTTGAAGACTCACCTAGTGAATTAGAACTGA
TGAGTCATTATTTACAAGAG

Product: two-component response regulator

Products: NA

Alternate protein names: PAT-1 [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSTTPINNYRLNHKLHPLSLLAQLTSRHATGCLRVFTDTTSWTINLEAGKLTYASYSDKLFERFDNQLRRLSQKIPTLNS
ATRVQMRLMFEPKGEDQSMLYADYQAICWLVNQNHINPKQAAILIEELAKEVIETFLVIKQGSYEFFPDILWEEMPKFCY
LDLRLLVEYCQKQLRQRQPTPPSVNTGGGSQVLPSTRPASSPSSNQNHPENSVNSQPINPPSLVRKTLYTIACIDDSQTV
LNSIRSFLDENVFTVVTINDPVKALMQVLRSKPDLILLDVTMPNLDGYELCSLLRRHSAFKNTPIIMVTGRTGFVDRAKA
KMVRSSGYLTKPFDQSELLKMVFKHIT

Sequences:

>Translated_347_residues
MSTTPINNYRLNHKLHPLSLLAQLTSRHATGCLRVFTDTTSWTINLEAGKLTYASYSDKLFERFDNQLRRLSQKIPTLNS
ATRVQMRLMFEPKGEDQSMLYADYQAICWLVNQNHINPKQAAILIEELAKEVIETFLVIKQGSYEFFPDILWEEMPKFCY
LDLRLLVEYCQKQLRQRQPTPPSVNTGGGSQVLPSTRPASSPSSNQNHPENSVNSQPINPPSLVRKTLYTIACIDDSQTV
LNSIRSFLDENVFTVVTINDPVKALMQVLRSKPDLILLDVTMPNLDGYELCSLLRRHSAFKNTPIIMVTGRTGFVDRAKA
KMVRSSGYLTKPFDQSELLKMVFKHIT
>Mature_346_residues
STTPINNYRLNHKLHPLSLLAQLTSRHATGCLRVFTDTTSWTINLEAGKLTYASYSDKLFERFDNQLRRLSQKIPTLNSA
TRVQMRLMFEPKGEDQSMLYADYQAICWLVNQNHINPKQAAILIEELAKEVIETFLVIKQGSYEFFPDILWEEMPKFCYL
DLRLLVEYCQKQLRQRQPTPPSVNTGGGSQVLPSTRPASSPSSNQNHPENSVNSQPINPPSLVRKTLYTIACIDDSQTVL
NSIRSFLDENVFTVVTINDPVKALMQVLRSKPDLILLDVTMPNLDGYELCSLLRRHSAFKNTPIIMVTGRTGFVDRAKAK
MVRSSGYLTKPFDQSELLKMVFKHIT

Specific function: Controls heterocyst pattern formation. Required for the differentiation of intercalary heterocysts but not for terminal heterocysts [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=120, Percent_Identity=30.8333333333333, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 39546; Mature: 39415

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTPINNYRLNHKLHPLSLLAQLTSRHATGCLRVFTDTTSWTINLEAGKLTYASYSDKL
CCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCEEEEHHHHHHH
FERFDNQLRRLSQKIPTLNSATRVQMRLMFEPKGEDQSMLYADYQAICWLVNQNHINPKQ
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEHCCHHHHEEEECCCCCCHHH
AAILIEELAKEVIETFLVIKQGSYEFFPDILWEEMPKFCYLDLRLLVEYCQKQLRQRQPT
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
PPSVNTGGGSQVLPSTRPASSPSSNQNHPENSVNSQPINPPSLVRKTLYTIACIDDSQTV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCHHH
LNSIRSFLDENVFTVVTINDPVKALMQVLRSKPDLILLDVTMPNLDGYELCSLLRRHSAF
HHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
KNTPIIMVTGRTGFVDRAKAKMVRSSGYLTKPFDQSELLKMVFKHIT
CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
STTPINNYRLNHKLHPLSLLAQLTSRHATGCLRVFTDTTSWTINLEAGKLTYASYSDKL
CCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCEEEEHHHHHHH
FERFDNQLRRLSQKIPTLNSATRVQMRLMFEPKGEDQSMLYADYQAICWLVNQNHINPKQ
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEHCCHHHHEEEECCCCCCHHH
AAILIEELAKEVIETFLVIKQGSYEFFPDILWEEMPKFCYLDLRLLVEYCQKQLRQRQPT
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
PPSVNTGGGSQVLPSTRPASSPSSNQNHPENSVNSQPINPPSLVRKTLYTIACIDDSQTV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCHHH
LNSIRSFLDENVFTVVTINDPVKALMQVLRSKPDLILLDVTMPNLDGYELCSLLRRHSAF
HHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
KNTPIIMVTGRTGFVDRAKAKMVRSSGYLTKPFDQSELLKMVFKHIT
CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1608976; 11237320; 11759840 [H]