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The map label for this gene is pchR [H]

Identifier: 17229641

GI number: 17229641

Start: 2580623

End: 2581642

Strand: Reverse

Name: pchR [H]

Synonym: all2149

Alternate gene names: 17229641

Gene position: 2581642-2580623 (Counterclockwise)

Preceding gene: 17229642

Following gene: 17229640

Centisome position: 40.25

GC content: 36.37

Gene sequence:

>1020_bases
ATGACAAAAATTATTACAAGTACAGACTGGGAAGAAATATGGACAAAAAGTGAACAAAATGGTCAACTTTCTAGTCAATT
AAAGAGTTTTGAAACTATCCATCAAGGGAAAATTATAGATATCTGTCATACCTATGAATGCTGGACAGAATTACGTAGCG
GATTATTTATTAAGATACATGAAAAAGAGTTTATTAATGATCTGATATGGATCAGAGATATTCCTGATGAATCTCTCTTT
GGGTTGAGTTTTTTTCTTTCAGGAAAAGTGAGGATTGAACGCCACGGTTTAACTGACAAGACAGACGAAATCGTAGGCAG
ATATTATTCAGAATGTAACTGCGATATCAAAGAAACTGAATGGTGGAAAGCCGGAGAAAAGTTTTCACGAATTTATCTGA
AAATCGAACCACAGCAATTCTTTCAAAGTTTTGGCGAAGAAGAATTAGAACAGATACCCATTTTCCTGCGCCAAGCAGTG
ATGAATGGTAAAGTACAGCCTTACTACCAGCAAGGGGAAATTACACAGCAAATGTGGCAGGTGTTATGTAATATCCTCAA
GTGTCCCTATCAAGGCTTGATGAAGCGAATGTATTTAGAAAGTCAAGCAATGGAATTGATGACGCTTTATTTCCAACAAT
TTCAGGAGCAGGAGAGATCTAATCATAGCTTTCCCGGCAAGAATTTGAGAGATGTTGAAAGAATATACCAAGCCAAGGAA
ATTTTGTTAGGTAATCTAGAAAATCCACCTAGCCTGATAGAGTTAGCACAACAAGTAGGGATAAATGAATTTAAATTGAA
GTGTGGGTTTCGTCAAGTTTTCGGGACATCTGCGTTCAAATATTTGCACAACTATCGTCTAGAAAAAGCAAAACAACTCT
TAGCATTAGGAGAAATGAAAGTTGAAGAAGTGGCATTTAGAGTAGGTTTTGACAGTCGCAGTTACTTTGCTTTAGCTTTC
CGCAAAAAATTTGGTTTGAATCCCAAACAATACTTTCAACAGCAACAAAAATCCCTCTAG

Upstream 100 bases:

>100_bases
ATTGCATCCAGTATTAGGTGTTCCCTTTTAATAAACTGGAAAAGGTGCGTTAGTTTCAACCATATATCAGCTTGATAATA
ATAGCAATTATCATTTAACT

Downstream 100 bases:

>100_bases
CGTTCAAAAAAAATCCCTCTAGCGTTCAAATTAGAAATCCGAATCCCGTATTGTAGATACACTACTAGTTTAGTTAAGAA
ATATTCCTAACAGCTTGTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTKIITSTDWEEIWTKSEQNGQLSSQLKSFETIHQGKIIDICHTYECWTELRSGLFIKIHEKEFINDLIWIRDIPDESLF
GLSFFLSGKVRIERHGLTDKTDEIVGRYYSECNCDIKETEWWKAGEKFSRIYLKIEPQQFFQSFGEEELEQIPIFLRQAV
MNGKVQPYYQQGEITQQMWQVLCNILKCPYQGLMKRMYLESQAMELMTLYFQQFQEQERSNHSFPGKNLRDVERIYQAKE
ILLGNLENPPSLIELAQQVGINEFKLKCGFRQVFGTSAFKYLHNYRLEKAKQLLALGEMKVEEVAFRVGFDSRSYFALAF
RKKFGLNPKQYFQQQQKSL

Sequences:

>Translated_339_residues
MTKIITSTDWEEIWTKSEQNGQLSSQLKSFETIHQGKIIDICHTYECWTELRSGLFIKIHEKEFINDLIWIRDIPDESLF
GLSFFLSGKVRIERHGLTDKTDEIVGRYYSECNCDIKETEWWKAGEKFSRIYLKIEPQQFFQSFGEEELEQIPIFLRQAV
MNGKVQPYYQQGEITQQMWQVLCNILKCPYQGLMKRMYLESQAMELMTLYFQQFQEQERSNHSFPGKNLRDVERIYQAKE
ILLGNLENPPSLIELAQQVGINEFKLKCGFRQVFGTSAFKYLHNYRLEKAKQLLALGEMKVEEVAFRVGFDSRSYFALAF
RKKFGLNPKQYFQQQQKSL
>Mature_338_residues
TKIITSTDWEEIWTKSEQNGQLSSQLKSFETIHQGKIIDICHTYECWTELRSGLFIKIHEKEFINDLIWIRDIPDESLFG
LSFFLSGKVRIERHGLTDKTDEIVGRYYSECNCDIKETEWWKAGEKFSRIYLKIEPQQFFQSFGEEELEQIPIFLRQAVM
NGKVQPYYQQGEITQQMWQVLCNILKCPYQGLMKRMYLESQAMELMTLYFQQFQEQERSNHSFPGKNLRDVERIYQAKEI
LLGNLENPPSLIELAQQVGINEFKLKCGFRQVFGTSAFKYLHNYRLEKAKQLLALGEMKVEEVAFRVGFDSRSYFALAFR
KKFGLNPKQYFQQQQKSL

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40195; Mature: 40063

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIITSTDWEEIWTKSEQNGQLSSQLKSFETIHQGKIIDICHTYECWTELRSGLFIKIH
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCEEEEE
EKEFINDLIWIRDIPDESLFGLSFFLSGKVRIERHGLTDKTDEIVGRYYSECNCDIKETE
CHHHHHHHHHHCCCCCCHHHHHHHEECCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCH
WWKAGEKFSRIYLKIEPQQFFQSFGEEELEQIPIFLRQAVMNGKVQPYYQQGEITQQMWQ
HHHHCHHEEEEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHH
VLCNILKCPYQGLMKRMYLESQAMELMTLYFQQFQEQERSNHSFPGKNLRDVERIYQAKE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ILLGNLENPPSLIELAQQVGINEFKLKCGFRQVFGTSAFKYLHNYRLEKAKQLLALGEMK
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEEVAFRVGFDSRSYFALAFRKKFGLNPKQYFQQQQKSL
HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TKIITSTDWEEIWTKSEQNGQLSSQLKSFETIHQGKIIDICHTYECWTELRSGLFIKIH
CCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCEEEEE
EKEFINDLIWIRDIPDESLFGLSFFLSGKVRIERHGLTDKTDEIVGRYYSECNCDIKETE
CHHHHHHHHHHCCCCCCHHHHHHHEECCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCH
WWKAGEKFSRIYLKIEPQQFFQSFGEEELEQIPIFLRQAVMNGKVQPYYQQGEITQQMWQ
HHHHCHHEEEEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHH
VLCNILKCPYQGLMKRMYLESQAMELMTLYFQQFQEQERSNHSFPGKNLRDVERIYQAKE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ILLGNLENPPSLIELAQQVGINEFKLKCGFRQVFGTSAFKYLHNYRLEKAKQLLALGEMK
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEEVAFRVGFDSRSYFALAFRKKFGLNPKQYFQQQQKSL
HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]