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The map label for this gene is yfkH [H]

Identifier: 17229562

GI number: 17229562

Start: 2476471

End: 2477376

Strand: Reverse

Name: yfkH [H]

Synonym: all2070

Alternate gene names: 17229562

Gene position: 2477376-2476471 (Counterclockwise)

Preceding gene: 17229564

Following gene: 17229561

Centisome position: 38.63

GC content: 41.72

Gene sequence:

>906_bases
ATGGTTCAGTCTCGTTTTGTTCGCTTCTTTCGTCACCTGAATTGGCACACACTCAAAAAAACGTTTACCAGGACAACGGA
AAGACGACTGTTGGGACTGGGTTCCGAAATTGCCTTCAATGCGATGTTATCTTTATTTCCGGCAATTCTCGCCGTACTCA
CTGCTATTGGTTTCTTTGCAGACTCCTTGCAAGACACCTTTAGACAACTAGCAGCGCAATTAAGCCAAGTTGCACCAGAA
GAAGCAATGGTATTGATTCGAGAGTTTGCTGGTAGAGAAATTGCCAACTCTCGAAATAGTGGCTTGTTTTCTCTAAGTTT
TGTCATAGCTATTTGGACAGCTTCCGGTGCTGTAAGTACTGCTATGACTGCCTTTGATCAAATCCATCAAATCCCTCAAG
AAAAGATGCGCCCGTTTTGGAAGTCTAAACTTGTGTCTTTAGGCTTAACAGTTGGGACTATCTTACTGTTGGTACTAGCT
TCTTTCTTAGTATTTATCAGTGATTTATTGTTGGGAATGGTGGTAAACGAAAATGGTGCTTTGATTTTTCTATTGCATTT
GTGGCAGTTATTACGCTGGCCTTTAGCATTAGGGATTGTAGCTACAGCCTTTAGTTTTATTTATCGTTATGGGACTAGTG
TTTGGAAACCAGGCACACCGATAATGCCAGGGGCGATTGTAGCAGCAATTTTCTGGGCAATTTTATCTGCCTTATTTCGG
CTGTATGTAGCGAATTTTGGTAACTATAACAAAGTTTATGGGGCTGTGGGGACAGTGATAGTTTTAATGTTATGGCTGTG
GATGAGTGCGGCTGTTTTGTTAATTGGCGACCAATTAAACGTCACTGTCGGCGAAGAAATTCACTCAAAAGCATCCAAGG
ATCTACCACAAGAGGTTCGTCAATAA

Upstream 100 bases:

>100_bases
ACAGTTAAGCAACTTACCATAACCAGTTTTCCGATAGATGCGATCGCCAGTCAACTCTGGCACATTATTTAAGTAAACTT
ATCTGCCATCACTAAAAATC

Downstream 100 bases:

>100_bases
GTATCGTGACAACTCTTGTAAATTTCCCAAATACCAGTACAATGTTGAACAATTTTATTGCGAAAAACGAGCGATCGCCT
GAATGCCTAATTCTTCTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MVQSRFVRFFRHLNWHTLKKTFTRTTERRLLGLGSEIAFNAMLSLFPAILAVLTAIGFFADSLQDTFRQLAAQLSQVAPE
EAMVLIREFAGREIANSRNSGLFSLSFVIAIWTASGAVSTAMTAFDQIHQIPQEKMRPFWKSKLVSLGLTVGTILLLVLA
SFLVFISDLLLGMVVNENGALIFLLHLWQLLRWPLALGIVATAFSFIYRYGTSVWKPGTPIMPGAIVAAIFWAILSALFR
LYVANFGNYNKVYGAVGTVIVLMLWLWMSAAVLLIGDQLNVTVGEEIHSKASKDLPQEVRQ

Sequences:

>Translated_301_residues
MVQSRFVRFFRHLNWHTLKKTFTRTTERRLLGLGSEIAFNAMLSLFPAILAVLTAIGFFADSLQDTFRQLAAQLSQVAPE
EAMVLIREFAGREIANSRNSGLFSLSFVIAIWTASGAVSTAMTAFDQIHQIPQEKMRPFWKSKLVSLGLTVGTILLLVLA
SFLVFISDLLLGMVVNENGALIFLLHLWQLLRWPLALGIVATAFSFIYRYGTSVWKPGTPIMPGAIVAAIFWAILSALFR
LYVANFGNYNKVYGAVGTVIVLMLWLWMSAAVLLIGDQLNVTVGEEIHSKASKDLPQEVRQ
>Mature_301_residues
MVQSRFVRFFRHLNWHTLKKTFTRTTERRLLGLGSEIAFNAMLSLFPAILAVLTAIGFFADSLQDTFRQLAAQLSQVAPE
EAMVLIREFAGREIANSRNSGLFSLSFVIAIWTASGAVSTAMTAFDQIHQIPQEKMRPFWKSKLVSLGLTVGTILLLVLA
SFLVFISDLLLGMVVNENGALIFLLHLWQLLRWPLALGIVATAFSFIYRYGTSVWKPGTPIMPGAIVAAIFWAILSALFR
LYVANFGNYNKVYGAVGTVIVLMLWLWMSAAVLLIGDQLNVTVGEEIHSKASKDLPQEVRQ

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33514; Mature: 33514

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQSRFVRFFRHLNWHTLKKTFTRTTERRLLGLGSEIAFNAMLSLFPAILAVLTAIGFFA
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DSLQDTFRQLAAQLSQVAPEEAMVLIREFAGREIANSRNSGLFSLSFVIAIWTASGAVST
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCHHHHH
AMTAFDQIHQIPQEKMRPFWKSKLVSLGLTVGTILLLVLASFLVFISDLLLGMVVNENGA
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LIFLLHLWQLLRWPLALGIVATAFSFIYRYGTSVWKPGTPIMPGAIVAAIFWAILSALFR
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LYVANFGNYNKVYGAVGTVIVLMLWLWMSAAVLLIGDQLNVTVGEEIHSKASKDLPQEVR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHHHC
Q
C
>Mature Secondary Structure
MVQSRFVRFFRHLNWHTLKKTFTRTTERRLLGLGSEIAFNAMLSLFPAILAVLTAIGFFA
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DSLQDTFRQLAAQLSQVAPEEAMVLIREFAGREIANSRNSGLFSLSFVIAIWTASGAVST
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCHHHHH
AMTAFDQIHQIPQEKMRPFWKSKLVSLGLTVGTILLLVLASFLVFISDLLLGMVVNENGA
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LIFLLHLWQLLRWPLALGIVATAFSFIYRYGTSVWKPGTPIMPGAIVAAIFWAILSALFR
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LYVANFGNYNKVYGAVGTVIVLMLWLWMSAAVLLIGDQLNVTVGEEIHSKASKDLPQEVR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHHHC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]