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The map label for this gene is skfB [H]

Identifier: 17229521

GI number: 17229521

Start: 2428039

End: 2429301

Strand: Reverse

Name: skfB [H]

Synonym: all2029

Alternate gene names: 17229521

Gene position: 2429301-2428039 (Counterclockwise)

Preceding gene: 17229522

Following gene: 17229520

Centisome position: 37.88

GC content: 47.43

Gene sequence:

>1263_bases
ATGTCTGAAAAACACCATCGAACCAGTTATGCCGTTTGGGAAATCACATTGAAATGCAATCTTGCTTGTAGTCATTGTGG
TTCACGGGCAGGACAGGCAAGGCATCAAGAACTCTCGACAGCAGAAGCTCTTAACCTTGTTCAGCAATTAGCTGAGGTGG
GAATTAAAGAAGTAACTCTCATTGGCGGAGAGGCTTTTCTACGTCCAGACTGGTTAGTAATTGCGAAAGCTATTACCGAT
GCTGGTATGCTCTGCGGCATGACTACGGGGGGTTATGGCATCTCTTTGGAAATGGCACAGCGTATGAAAGAAGCAGGAAT
TGCAAAAGTTTCTGTTTCTACCGATGGCATGGAAGCAACCCATGATCATTTACGGGGACGAAAAGGCTCTTGGAAGTCTG
GCTTAAGAACCATGAGCTACCTTAAAGAAGTTGGCATTCTCTTCGGCTGTAATACCCAAATCAACCGTCTGTCTGCCCCT
GAATTTCCTAGTATTTATGAGCATATCCGCGATGCAGGCGCGCGAGCATGGCAAATTCAACTAACTGTGCCAATGGGAAA
TGCCGCCGACAATGCAGATATCCTTCTCCAACCCTCTGAGCTATTAGACTTATATCCTATGCTGGCTCGTGTTGCTCAAC
GAGCTAACACCGAAGGGGTAAGAGTTGCTGCTGGTAACAACATCGGTTACTACGGGCCTTATGAACGGTTGCTGCGGGGA
CAAGGTAAAGAGTGGGGATTTTGGCGGGGTTGCGGTGCTGGGCTATCAACTTTAGGTTTAGAGGCGGACGGCACAATTAA
AGGCTGCCCTTCCCTACCAACAACCGCTTATGCAGGTGGCAATATCCGAGAACGTCCACTAAGGGAAATTGTAGAACAAT
CCGAAGAATTGCAGTTCAATCTCTATGCTGGTACACCCGAAGGAACAGCGTACTTGTGGGGATTCTGCAAGACTTGTAAA
TTTGCCGAATTGTGTCGCGGGGGTTGCACTTGGACAGCACACGTATTCTTCAATCGTCGGGGTAACAATCCTTACTGCCA
CCATCGCGCCCTAGAATTAGCAAAGCGTGGCTTACGAGAGCGAGTTTATCCAAAAGTGTCAGCCCCAGGAGTTCCCTTCG
ATAATGGCGAATTTACCATCATTGAAGAACCACTTGATGCACCCTGGATAGAAAATGATCCACTCCACTTTACGGCTGAC
TCCATCCAATGGCCGGATAGTTGGCAAAGTAAATCTGAACTTTTTTATTCTGTAGCAAGATGA

Upstream 100 bases:

>100_bases
CAAACGTCATCGCCGTAATTATAAAAGCTGTTATACGCATCATATAAATCCATAACAGCTTTTGACTTACACAGCTAATA
CCAAAACACTGGGCAAAACT

Downstream 100 bases:

>100_bases
ATCATTTAAACGAAGAAAATCAGGACGCAAACATTTCCTCTGAAGAACTGTTAGTTTCTCAACCTCTCCTACCTCGGTTT
GCTTGGGAAGATGAACGAGC

Product: heme biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MSEKHHRTSYAVWEITLKCNLACSHCGSRAGQARHQELSTAEALNLVQQLAEVGIKEVTLIGGEAFLRPDWLVIAKAITD
AGMLCGMTTGGYGISLEMAQRMKEAGIAKVSVSTDGMEATHDHLRGRKGSWKSGLRTMSYLKEVGILFGCNTQINRLSAP
EFPSIYEHIRDAGARAWQIQLTVPMGNAADNADILLQPSELLDLYPMLARVAQRANTEGVRVAAGNNIGYYGPYERLLRG
QGKEWGFWRGCGAGLSTLGLEADGTIKGCPSLPTTAYAGGNIRERPLREIVEQSEELQFNLYAGTPEGTAYLWGFCKTCK
FAELCRGGCTWTAHVFFNRRGNNPYCHHRALELAKRGLRERVYPKVSAPGVPFDNGEFTIIEEPLDAPWIENDPLHFTAD
SIQWPDSWQSKSELFYSVAR

Sequences:

>Translated_420_residues
MSEKHHRTSYAVWEITLKCNLACSHCGSRAGQARHQELSTAEALNLVQQLAEVGIKEVTLIGGEAFLRPDWLVIAKAITD
AGMLCGMTTGGYGISLEMAQRMKEAGIAKVSVSTDGMEATHDHLRGRKGSWKSGLRTMSYLKEVGILFGCNTQINRLSAP
EFPSIYEHIRDAGARAWQIQLTVPMGNAADNADILLQPSELLDLYPMLARVAQRANTEGVRVAAGNNIGYYGPYERLLRG
QGKEWGFWRGCGAGLSTLGLEADGTIKGCPSLPTTAYAGGNIRERPLREIVEQSEELQFNLYAGTPEGTAYLWGFCKTCK
FAELCRGGCTWTAHVFFNRRGNNPYCHHRALELAKRGLRERVYPKVSAPGVPFDNGEFTIIEEPLDAPWIENDPLHFTAD
SIQWPDSWQSKSELFYSVAR
>Mature_419_residues
SEKHHRTSYAVWEITLKCNLACSHCGSRAGQARHQELSTAEALNLVQQLAEVGIKEVTLIGGEAFLRPDWLVIAKAITDA
GMLCGMTTGGYGISLEMAQRMKEAGIAKVSVSTDGMEATHDHLRGRKGSWKSGLRTMSYLKEVGILFGCNTQINRLSAPE
FPSIYEHIRDAGARAWQIQLTVPMGNAADNADILLQPSELLDLYPMLARVAQRANTEGVRVAAGNNIGYYGPYERLLRGQ
GKEWGFWRGCGAGLSTLGLEADGTIKGCPSLPTTAYAGGNIRERPLREIVEQSEELQFNLYAGTPEGTAYLWGFCKTCKF
AELCRGGCTWTAHVFFNRRGNNPYCHHRALELAKRGLRERVYPKVSAPGVPFDNGEFTIIEEPLDAPWIENDPLHFTADS
IQWPDSWQSKSELFYSVAR

Specific function: Required for production of the bacteriocin skfA [H]

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the moaA/nifB/pqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 46435; Mature: 46304

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKHHRTSYAVWEITLKCNLACSHCGSRAGQARHQELSTAEALNLVQQLAEVGIKEVTL
CCCCCCCCEEEEEEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IGGEAFLRPDWLVIAKAITDAGMLCGMTTGGYGISLEMAQRMKEAGIAKVSVSTDGMEAT
ECCCEEECCCHHHHHHHHHHCCCEEEECCCCCCEEHHHHHHHHHCCCEEEEECCCCCHHH
HDHLRGRKGSWKSGLRTMSYLKEVGILFGCNTQINRLSAPEFPSIYEHIRDAGARAWQIQ
HHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEE
LTVPMGNAADNADILLQPSELLDLYPMLARVAQRANTEGVRVAAGNNIGYYGPYERLLRG
EEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCC
QGKEWGFWRGCGAGLSTLGLEADGTIKGCPSLPTTAYAGGNIRERPLREIVEQSEELQFN
CCCCCCCHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
LYAGTPEGTAYLWGFCKTCKFAELCRGGCTWTAHVFFNRRGNNPYCHHRALELAKRGLRE
EEECCCCCCCHHHHHHHHCCHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
RVYPKVSAPGVPFDNGEFTIIEEPLDAPWIENDPLHFTADSIQWPDSWQSKSELFYSVAR
HCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SEKHHRTSYAVWEITLKCNLACSHCGSRAGQARHQELSTAEALNLVQQLAEVGIKEVTL
CCCCCCCEEEEEEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IGGEAFLRPDWLVIAKAITDAGMLCGMTTGGYGISLEMAQRMKEAGIAKVSVSTDGMEAT
ECCCEEECCCHHHHHHHHHHCCCEEEECCCCCCEEHHHHHHHHHCCCEEEEECCCCCHHH
HDHLRGRKGSWKSGLRTMSYLKEVGILFGCNTQINRLSAPEFPSIYEHIRDAGARAWQIQ
HHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEE
LTVPMGNAADNADILLQPSELLDLYPMLARVAQRANTEGVRVAAGNNIGYYGPYERLLRG
EEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCC
QGKEWGFWRGCGAGLSTLGLEADGTIKGCPSLPTTAYAGGNIRERPLREIVEQSEELQFN
CCCCCCCHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
LYAGTPEGTAYLWGFCKTCKFAELCRGGCTWTAHVFFNRRGNNPYCHHRALELAKRGLRE
EEECCCCCCCHHHHHHHHCCHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
RVYPKVSAPGVPFDNGEFTIIEEPLDAPWIENDPLHFTADSIQWPDSWQSKSELFYSVAR
HCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 10568751 [H]