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The map label for this gene is ybbD [H]

Identifier: 17229323

GI number: 17229323

Start: 2195126

End: 2196223

Strand: Reverse

Name: ybbD [H]

Synonym: all1831

Alternate gene names: 17229323

Gene position: 2196223-2195126 (Counterclockwise)

Preceding gene: 17229327

Following gene: 17229322

Centisome position: 34.24

GC content: 43.17

Gene sequence:

>1098_bases
ATGCCAGCATTGCAGAGACTAGAACGCTTTGGAAATCACTTAATAATGGGTATTTCTGGTACTAGTTTGAGTGATGAAGA
TAAACGCGCTTTGGGTGAATTGAAACCAATAGGGGTAATATTCTTTGCTAAAAACTTTTTAGATGGTGTACCTTACGCGG
TTTGGCTGGAAACTTTTCAGGAGTTACATAGCCAGATACAAGAATATGCAGAACGCGATTCCATGTTTTTTACCTTAGAC
CATGAGGGAGGACGCGTTGTAAGGACACCTTTACCGATTACGAGATTTCCTCAGGCGTTGTTGTTGCGATCGCAGGCTCG
TGAAGTAGCAAAAGCCACGGCAATTGAATTAAAATCTTTGGGCATCAACTTATCTTGGTCGCCTGTAGCTGATATTTATT
CCCACCCGCAAAATCCTATTATCGGTTCTCGCGCTTTTGGTAATACCCCTGATACGGCGGCGGCTGGTGCGCGGGAATAT
TATTTGGGACTGACAGAAGCTGGAATTGTGGGATGCGCCAAACATTTCCCCGGACATGGTGATACGAGTAAGGACTCCCA
TGTGGAATTACCAATTCTCAACCTGACTCCAGAGGAATTACAAAATCGAGAACTTATTCCCTTCAAAGCTTTGATTGAAG
AAGGGATTCCCCTCATTATGACCGCCCATATTTTATTTCCCAAAATCGACCCAGATTTACCAGCTACCCTATCCCGCCCC
ATCCTCAAAACTATATTGCGGAAAGAACTTGGTTTTCAGGGTGTGGTCGTATCTGACGACTTAGACATGAAAGCAGTTTC
AGATATGTTTATGCAAAGTGGTACAGTCGCGCGGGCTTTTAATGCTGGCTGTGATTTATTTATTGTTTCTCGTAATATCC
ACGCGTCTTCTATCGAGCGTACATATAAAATTGCGGAAGATTTTACTGATTGTTTAACTGATGGTAGCTTGGCTGAGTCA
GTGGTAGAGTCCGCTAAGGAGAGAATCGAAAGACTATTGGCAGTAACTCCAGAATATTCTGTACAGGCGTTAGATAAAGA
TACTTTAGTCCGTCATGCCGAATTAGCGATCGCCTGTTGTTTTGAGAATAGTCAATAG

Upstream 100 bases:

>100_bases
GCTCAGATGTGAACTATCTCTATTGAGAGTGTAGGATAGGGGCTGAGATTATTTATGCTGTTAATCCAGTCTTTAGCTAC
ACAACTATAGGTTAAGCATT

Downstream 100 bases:

>100_bases
TCAATAGTCAATAGTCCATGATTAAAAACCTTCATTTTTAACTGTTGATTAATGACTAATCACCCTAATTAACTTGAGTT
CGGGTTAAAGATAAGAAGGT

Product: hypothetical protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MPALQRLERFGNHLIMGISGTSLSDEDKRALGELKPIGVIFFAKNFLDGVPYAVWLETFQELHSQIQEYAERDSMFFTLD
HEGGRVVRTPLPITRFPQALLLRSQAREVAKATAIELKSLGINLSWSPVADIYSHPQNPIIGSRAFGNTPDTAAAGAREY
YLGLTEAGIVGCAKHFPGHGDTSKDSHVELPILNLTPEELQNRELIPFKALIEEGIPLIMTAHILFPKIDPDLPATLSRP
ILKTILRKELGFQGVVVSDDLDMKAVSDMFMQSGTVARAFNAGCDLFIVSRNIHASSIERTYKIAEDFTDCLTDGSLAES
VVESAKERIERLLAVTPEYSVQALDKDTLVRHAELAIACCFENSQ

Sequences:

>Translated_365_residues
MPALQRLERFGNHLIMGISGTSLSDEDKRALGELKPIGVIFFAKNFLDGVPYAVWLETFQELHSQIQEYAERDSMFFTLD
HEGGRVVRTPLPITRFPQALLLRSQAREVAKATAIELKSLGINLSWSPVADIYSHPQNPIIGSRAFGNTPDTAAAGAREY
YLGLTEAGIVGCAKHFPGHGDTSKDSHVELPILNLTPEELQNRELIPFKALIEEGIPLIMTAHILFPKIDPDLPATLSRP
ILKTILRKELGFQGVVVSDDLDMKAVSDMFMQSGTVARAFNAGCDLFIVSRNIHASSIERTYKIAEDFTDCLTDGSLAES
VVESAKERIERLLAVTPEYSVQALDKDTLVRHAELAIACCFENSQ
>Mature_364_residues
PALQRLERFGNHLIMGISGTSLSDEDKRALGELKPIGVIFFAKNFLDGVPYAVWLETFQELHSQIQEYAERDSMFFTLDH
EGGRVVRTPLPITRFPQALLLRSQAREVAKATAIELKSLGINLSWSPVADIYSHPQNPIIGSRAFGNTPDTAAAGAREYY
LGLTEAGIVGCAKHFPGHGDTSKDSHVELPILNLTPEELQNRELIPFKALIEEGIPLIMTAHILFPKIDPDLPATLSRPI
LKTILRKELGFQGVVVSDDLDMKAVSDMFMQSGTVARAFNAGCDLFIVSRNIHASSIERTYKIAEDFTDCLTDGSLAESV
VESAKERIERLLAVTPEYSVQALDKDTLVRHAELAIACCFENSQ

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=289, Percent_Identity=33.2179930795848, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 40293; Mature: 40161

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALQRLERFGNHLIMGISGTSLSDEDKRALGELKPIGVIFFAKNFLDGVPYAVWLETFQ
CCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCHHHEEEHHHHHCCCCHHHHHHHHH
ELHSQIQEYAERDSMFFTLDHEGGRVVRTPLPITRFPQALLLRSQAREVAKATAIELKSL
HHHHHHHHHHHHCCEEEEEECCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
GINLSWSPVADIYSHPQNPIIGSRAFGNTPDTAAAGAREYYLGLTEAGIVGCAKHFPGHG
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHEEECHHHHHHHHHHHCCCCC
DTSKDSHVELPILNLTPEELQNRELIPFKALIEEGIPLIMTAHILFPKIDPDLPATLSRP
CCCCCCEEEEEEECCCHHHHCCCCCCHHHHHHHCCCCEEEEHHHHCCCCCCCCCHHHHHH
ILKTILRKELGFQGVVVSDDLDMKAVSDMFMQSGTVARAFNAGCDLFIVSRNIHASSIER
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCCHHHHHH
TYKIAEDFTDCLTDGSLAESVVESAKERIERLLAVTPEYSVQALDKDTLVRHAELAIACC
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHEEEEEE
FENSQ
ECCCC
>Mature Secondary Structure 
PALQRLERFGNHLIMGISGTSLSDEDKRALGELKPIGVIFFAKNFLDGVPYAVWLETFQ
CHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCHHHEEEHHHHHCCCCHHHHHHHHH
ELHSQIQEYAERDSMFFTLDHEGGRVVRTPLPITRFPQALLLRSQAREVAKATAIELKSL
HHHHHHHHHHHHCCEEEEEECCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
GINLSWSPVADIYSHPQNPIIGSRAFGNTPDTAAAGAREYYLGLTEAGIVGCAKHFPGHG
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHEEECHHHHHHHHHHHCCCCC
DTSKDSHVELPILNLTPEELQNRELIPFKALIEEGIPLIMTAHILFPKIDPDLPATLSRP
CCCCCCEEEEEEECCCHHHHCCCCCCHHHHHHHCCCCEEEEHHHHCCCCCCCCCHHHHHH
ILKTILRKELGFQGVVVSDDLDMKAVSDMFMQSGTVARAFNAGCDLFIVSRNIHASSIER
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCCHHHHHH
TYKIAEDFTDCLTDGSLAESVVESAKERIERLLAVTPEYSVQALDKDTLVRHAELAIACC
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHEEEEEE
FENSQ
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]