Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 17229233

GI number: 17229233

Start: 2091858

End: 2094455

Strand: Reverse

Name: ydcP [H]

Synonym: all1741

Alternate gene names: 17229233

Gene position: 2094455-2091858 (Counterclockwise)

Preceding gene: 17229235

Following gene: 17229231

Centisome position: 32.66

GC content: 47.07

Gene sequence:

>2598_bases
ATGAAAAGCGCTGACAGACAAAATCCCCAATCCTCCTTTCCACGTCCTGACATCCTCGCACCGGCTGGTAACTGGGAATG
TGCTAAAGCTGCTATAGAAAATGGGGCAGATGCGATTTATTTTGGTTTGGATAGGTTTAACGCCAGAATGCGGGCGCAAA
ATTTTACTGAGGCGGATTTACCGGAATTAATGGCATTCTTGCACCTGCGGGGTGTGAAAGGTTATGTCACCGTCAATACA
CTGATTTTTCCCCAAGAATTGGGGGAAGCGCAGCAGTATCTCCGCACAATTATTGCTGCTGGTGTGGATGCGGTGATTGT
GCAGGATGTGGGTATTTGTCGGCTTATCCGTCATCTGTCACCGGATTTTCCCATTCATGCTTCCACACAAATGACCATCA
CTAGCCCGGCTGGCGTGGAATTTGCCAAGTCTCTTGGTTGTGAATTGGTAGTACTAGCCCGTGAATGTTCTCTTGCGGAA
ATTAACAAGATTCAACAGCAGATTGCTCAAAGGGCTGCTTCTCTACCCCTAGAAGTTTTTGTTCACGGGGCTTTATGTGT
AGCCTATTCTGGTCAATGTTTGACTAGTGAAGCCTTGGGGGGACGTTCTGCTAATCGTGGTGAGTGCGCCCAGGCTTGCC
GAATGCCCTATGAATTAACTGTTGATGGGGAAATTACAGATTTAGGGGAACGCAAATATTTACTCAGCCCCCAAGATTTA
GCAGGATTAGAAATCTTGCCTGATTTGGTCAAGTCAGGAGTGACAAGTCTCAAAATTGAAGGGCGGTTAAAAGCTCCAGA
GTATGTGGCTAATGTTACCCGTGTCTATCGACAAGCATTAGATCGGGTGATAGGACACTCACAAAGGGATCATGTATCAC
ATCAAGAACGCTACGACTTAGAAATGGCTTTTTCTCGTGGACTTTACACGGGTTGGTTTCAGGGAATTAACAATCAAGAA
CTAGTTCACGCCAGATTTGGCAAGAAGCGAGGGGTTTACTTAGGTGAAGTCAGCCGCATTCGCCATGAAGAGGTGACAAT
TAAATTAGAAGCGCCTGTGAAGCCAGGGGATGGTGTGGTGTTTGACTGTGGTCATCCAGAGGCAAAAGAAGAAGGCGGTC
GAGTCTATGGGGTAGTGCAGAAGGGTAAAGAAGCAGTATTAAGCTTTGGTCAAGGTAATGTGAACTTCCGCCGCGTTCAT
GTAGGAGATAAACTGTGGAAAACTAGCGACCCAGAACTTGATAAACAGCTGCGCCAAAGCTTTGCTGGCGATAATCCCCA
ATTTCAACGTCCCATAGACTGGGAAATTCATGGGGAAATTGGTCAGCCATTGATAGCGATCGCCCGCGATGAACTCGGTA
ACATTGTACAAGTAGAATCAGCAATCTCATTAGTTGCAGCCCACACCAAACCCTTAGATACAGAACGTCTACAAGAACAA
TTCGGTCGTCTTGGTAACACCCCCTTCCGTTTAAGAACCCTCACCAATCACCTCAGTGGTGCTGTCATGGTTCCCGTCAG
TGAGTTAAATCGGATGCGGCGAGAAGTTGTCACTCAATTAGAAGAATTACGCAGTCAACCGAAACGCTGGCAACTACGTA
GTCATGTTTCTTTTCAAGACCTCCTCCCCCCTTTATCTCCCCCATCCCCTATCTCCCCCTCCCTCATCGTTCTAGTCCGC
AACCTCAAGCAACTCCAAGCCGCCCTAAAAACCGATGTCGAAACCCTATACTGCGAATTTGAAGATCCCCGCACCTACAA
AGAAGCAGTAAAAATAGTACATGAAGTCAGACAAGAAAAACAAAAACTAAGCCCTCCCTCTGCCCCCGAAGTTCGCCCGG
AGGGAAACCCTCCTTGCGACTTCTCTTCCGGCTCCCTGCCCCCTGCTTTTCCCCAAATCTTCGTCGCCCCACCCCGCATT
ACCAAACCCGGCGAAAACTGGATTTTACAGCAAGTCCGCGCCGCCAACGCCGATGGTTATCTGATCCGCAACTACGACCA
GTTAGAATTTTTTGCAGGCGATATTTGCATTGGTGATTTTTCGCTGAATGTTGCCAACCCCTTAACCGCCGACTACTTTA
AGCAAAACTTTGGTTTGAAACGGTTGACAGCATCCTATGATTTAAATATCAATCAACTAGAAAACTTACTTACCAGTTGC
CCAGCCCAGTGGTTTGAGGTGACAATCCATCAACATATACCAATGTTCCACATGGAGCATTGTGTATTTTGCGCCTTTCT
CTCAGAAGGAACTGACTATACCAATTGTGGCAGACCTTGTGAAAAACATGAAGTGAAATTGCGCGATCGCGTGGGTAGTG
AACACGTCCTACAAGCAGACGCAGGCTGCCGTAATACTGTATTCAACGGCACAGCCCAAACCGGAGCAGAATACGTACAG
CGTTTGATAAGCTTGGGTTTACGTCACTTCCGCCTTGAGTTTGTCAATGAGACACCTGAGCAAGTAACTAAAACAATACA
GCGTTATCATCAATTACTGAAAGGTGAAATTACAGGTTCTCAACTGTGGCGAGAGTTAAAACTACAAAATCAGCTAGGTG
TAACTCGCGGCCCCTTAAGTGTAGCAGCACTGCGATGA

Upstream 100 bases:

>100_bases
ACTGATATAAATACATCATTGGTAATTGCTGATTCCCTTCCTGTCCCCAGTTTTTCTTAGATAAAATTACTACGGTGATA
CATAACCTTTCGCAAACTTG

Downstream 100 bases:

>100_bases
AATGCTTGCTGGGAGAGGAAAAGAATCCGCCACTAAAATTCATAAAAGCGGAGTCCTCCCTGTGGGACTCTACGCGAACG
TGGGTGGTCGAAGTTGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 865; Mature: 865

Protein sequence:

>865_residues
MKSADRQNPQSSFPRPDILAPAGNWECAKAAIENGADAIYFGLDRFNARMRAQNFTEADLPELMAFLHLRGVKGYVTVNT
LIFPQELGEAQQYLRTIIAAGVDAVIVQDVGICRLIRHLSPDFPIHASTQMTITSPAGVEFAKSLGCELVVLARECSLAE
INKIQQQIAQRAASLPLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELTVDGEITDLGERKYLLSPQDL
AGLEILPDLVKSGVTSLKIEGRLKAPEYVANVTRVYRQALDRVIGHSQRDHVSHQERYDLEMAFSRGLYTGWFQGINNQE
LVHARFGKKRGVYLGEVSRIRHEEVTIKLEAPVKPGDGVVFDCGHPEAKEEGGRVYGVVQKGKEAVLSFGQGNVNFRRVH
VGDKLWKTSDPELDKQLRQSFAGDNPQFQRPIDWEIHGEIGQPLIAIARDELGNIVQVESAISLVAAHTKPLDTERLQEQ
FGRLGNTPFRLRTLTNHLSGAVMVPVSELNRMRREVVTQLEELRSQPKRWQLRSHVSFQDLLPPLSPPSPISPSLIVLVR
NLKQLQAALKTDVETLYCEFEDPRTYKEAVKIVHEVRQEKQKLSPPSAPEVRPEGNPPCDFSSGSLPPAFPQIFVAPPRI
TKPGENWILQQVRAANADGYLIRNYDQLEFFAGDICIGDFSLNVANPLTADYFKQNFGLKRLTASYDLNINQLENLLTSC
PAQWFEVTIHQHIPMFHMEHCVFCAFLSEGTDYTNCGRPCEKHEVKLRDRVGSEHVLQADAGCRNTVFNGTAQTGAEYVQ
RLISLGLRHFRLEFVNETPEQVTKTIQRYHQLLKGEITGSQLWRELKLQNQLGVTRGPLSVAALR

Sequences:

>Translated_865_residues
MKSADRQNPQSSFPRPDILAPAGNWECAKAAIENGADAIYFGLDRFNARMRAQNFTEADLPELMAFLHLRGVKGYVTVNT
LIFPQELGEAQQYLRTIIAAGVDAVIVQDVGICRLIRHLSPDFPIHASTQMTITSPAGVEFAKSLGCELVVLARECSLAE
INKIQQQIAQRAASLPLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELTVDGEITDLGERKYLLSPQDL
AGLEILPDLVKSGVTSLKIEGRLKAPEYVANVTRVYRQALDRVIGHSQRDHVSHQERYDLEMAFSRGLYTGWFQGINNQE
LVHARFGKKRGVYLGEVSRIRHEEVTIKLEAPVKPGDGVVFDCGHPEAKEEGGRVYGVVQKGKEAVLSFGQGNVNFRRVH
VGDKLWKTSDPELDKQLRQSFAGDNPQFQRPIDWEIHGEIGQPLIAIARDELGNIVQVESAISLVAAHTKPLDTERLQEQ
FGRLGNTPFRLRTLTNHLSGAVMVPVSELNRMRREVVTQLEELRSQPKRWQLRSHVSFQDLLPPLSPPSPISPSLIVLVR
NLKQLQAALKTDVETLYCEFEDPRTYKEAVKIVHEVRQEKQKLSPPSAPEVRPEGNPPCDFSSGSLPPAFPQIFVAPPRI
TKPGENWILQQVRAANADGYLIRNYDQLEFFAGDICIGDFSLNVANPLTADYFKQNFGLKRLTASYDLNINQLENLLTSC
PAQWFEVTIHQHIPMFHMEHCVFCAFLSEGTDYTNCGRPCEKHEVKLRDRVGSEHVLQADAGCRNTVFNGTAQTGAEYVQ
RLISLGLRHFRLEFVNETPEQVTKTIQRYHQLLKGEITGSQLWRELKLQNQLGVTRGPLSVAALR
>Mature_865_residues
MKSADRQNPQSSFPRPDILAPAGNWECAKAAIENGADAIYFGLDRFNARMRAQNFTEADLPELMAFLHLRGVKGYVTVNT
LIFPQELGEAQQYLRTIIAAGVDAVIVQDVGICRLIRHLSPDFPIHASTQMTITSPAGVEFAKSLGCELVVLARECSLAE
INKIQQQIAQRAASLPLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELTVDGEITDLGERKYLLSPQDL
AGLEILPDLVKSGVTSLKIEGRLKAPEYVANVTRVYRQALDRVIGHSQRDHVSHQERYDLEMAFSRGLYTGWFQGINNQE
LVHARFGKKRGVYLGEVSRIRHEEVTIKLEAPVKPGDGVVFDCGHPEAKEEGGRVYGVVQKGKEAVLSFGQGNVNFRRVH
VGDKLWKTSDPELDKQLRQSFAGDNPQFQRPIDWEIHGEIGQPLIAIARDELGNIVQVESAISLVAAHTKPLDTERLQEQ
FGRLGNTPFRLRTLTNHLSGAVMVPVSELNRMRREVVTQLEELRSQPKRWQLRSHVSFQDLLPPLSPPSPISPSLIVLVR
NLKQLQAALKTDVETLYCEFEDPRTYKEAVKIVHEVRQEKQKLSPPSAPEVRPEGNPPCDFSSGSLPPAFPQIFVAPPRI
TKPGENWILQQVRAANADGYLIRNYDQLEFFAGDICIGDFSLNVANPLTADYFKQNFGLKRLTASYDLNINQLENLLTSC
PAQWFEVTIHQHIPMFHMEHCVFCAFLSEGTDYTNCGRPCEKHEVKLRDRVGSEHVLQADAGCRNTVFNGTAQTGAEYVQ
RLISLGLRHFRLEFVNETPEQVTKTIQRYHQLLKGEITGSQLWRELKLQNQLGVTRGPLSVAALR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=581, Percent_Identity=32.013769363167, Blast_Score=235, Evalue=1e-62,
Organism=Escherichia coli, GI1788397, Length=313, Percent_Identity=32.5878594249201, Blast_Score=152, Evalue=1e-37,
Organism=Escherichia coli, GI1789548, Length=298, Percent_Identity=33.8926174496644, Blast_Score=147, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 96754; Mature: 96754

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSADRQNPQSSFPRPDILAPAGNWECAKAAIENGADAIYFGLDRFNARMRAQNFTEADL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCH
PELMAFLHLRGVKGYVTVNTLIFPQELGEAQQYLRTIIAAGVDAVIVQDVGICRLIRHLS
HHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PDFPIHASTQMTITSPAGVEFAKSLGCELVVLARECSLAEINKIQQQIAQRAASLPLEVF
CCCCCCCCCEEEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHH
VHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELTVDGEITDLGERKYLLSPQDL
HHHHHEEEECCCEEEHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCC
AGLEILPDLVKSGVTSLKIEGRLKAPEYVANVTRVYRQALDRVIGHSQRDHVSHQERYDL
CHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
EMAFSRGLYTGWFQGINNQELVHARFGKKRGVYLGEVSRIRHEEVTIKLEAPVKPGDGVV
HHHHHCCCHHHHHCCCCCCEEHHHHHCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCCEE
FDCGHPEAKEEGGRVYGVVQKGKEAVLSFGQGNVNFRRVHVGDKLWKTSDPELDKQLRQS
EECCCCCHHHCCCEEEEEEHHCHHHHHHCCCCCCEEEEEECCCHHCCCCCCHHHHHHHHH
FAGDNPQFQRPIDWEIHGEIGQPLIAIARDELGNIVQVESAISLVAAHTKPLDTERLQEQ
HCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCEEEHHHHHHHHHHCCCCCCHHHHHHH
FGRLGNTPFRLRTLTNHLSGAVMVPVSELNRMRREVVTQLEELRSQPKRWQLRSHVSFQD
HHHCCCCCEEHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
LLPPLSPPSPISPSLIVLVRNLKQLQAALKTDVETLYCEFEDPRTYKEAVKIVHEVRQEK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
QKLSPPSAPEVRPEGNPPCDFSSGSLPPAFPQIFVAPPRITKPGENWILQQVRAANADGY
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCE
LIRNYDQLEFFAGDICIGDFSLNVANPLTADYFKQNFGLKRLTASYDLNINQLENLLTSC
EEECCCHHHHEECCEEEECEECCCCCCCHHHHHHHCCCHHHEEHCCCCCHHHHHHHHHHC
PAQWFEVTIHQHIPMFHMEHCVFCAFLSEGTDYTNCGRPCEKHEVKLRDRVGSEHVLQAD
CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECC
AGCRNTVFNGTAQTGAEYVQRLISLGLRHFRLEFVNETPEQVTKTIQRYHQLLKGEITGS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
QLWRELKLQNQLGVTRGPLSVAALR
HHHHHHHHHHHCCCCCCCCCCEECC
>Mature Secondary Structure
MKSADRQNPQSSFPRPDILAPAGNWECAKAAIENGADAIYFGLDRFNARMRAQNFTEADL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCH
PELMAFLHLRGVKGYVTVNTLIFPQELGEAQQYLRTIIAAGVDAVIVQDVGICRLIRHLS
HHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PDFPIHASTQMTITSPAGVEFAKSLGCELVVLARECSLAEINKIQQQIAQRAASLPLEVF
CCCCCCCCCEEEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHH
VHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELTVDGEITDLGERKYLLSPQDL
HHHHHEEEECCCEEEHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCC
AGLEILPDLVKSGVTSLKIEGRLKAPEYVANVTRVYRQALDRVIGHSQRDHVSHQERYDL
CHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
EMAFSRGLYTGWFQGINNQELVHARFGKKRGVYLGEVSRIRHEEVTIKLEAPVKPGDGVV
HHHHHCCCHHHHHCCCCCCEEHHHHHCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCCEE
FDCGHPEAKEEGGRVYGVVQKGKEAVLSFGQGNVNFRRVHVGDKLWKTSDPELDKQLRQS
EECCCCCHHHCCCEEEEEEHHCHHHHHHCCCCCCEEEEEECCCHHCCCCCCHHHHHHHHH
FAGDNPQFQRPIDWEIHGEIGQPLIAIARDELGNIVQVESAISLVAAHTKPLDTERLQEQ
HCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCEEEHHHHHHHHHHCCCCCCHHHHHHH
FGRLGNTPFRLRTLTNHLSGAVMVPVSELNRMRREVVTQLEELRSQPKRWQLRSHVSFQD
HHHCCCCCEEHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
LLPPLSPPSPISPSLIVLVRNLKQLQAALKTDVETLYCEFEDPRTYKEAVKIVHEVRQEK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
QKLSPPSAPEVRPEGNPPCDFSSGSLPPAFPQIFVAPPRITKPGENWILQQVRAANADGY
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCE
LIRNYDQLEFFAGDICIGDFSLNVANPLTADYFKQNFGLKRLTASYDLNINQLENLLTSC
EEECCCHHHHEECCEEEECEECCCCCCCHHHHHHHCCCHHHEEHCCCCCHHHHHHHHHHC
PAQWFEVTIHQHIPMFHMEHCVFCAFLSEGTDYTNCGRPCEKHEVKLRDRVGSEHVLQAD
CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECC
AGCRNTVFNGTAQTGAEYVQRLISLGLRHFRLEFVNETPEQVTKTIQRYHQLLKGEITGS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
QLWRELKLQNQLGVTRGPLSVAALR
HHHHHHHHHHHCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]