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The map label for this gene is rca

Identifier: 17229025

GI number: 17229025

Start: 1794445

End: 1795689

Strand: Direct

Name: rca

Synonym: alr1533

Alternate gene names: 17229025

Gene position: 1794445-1795689 (Clockwise)

Preceding gene: 17229024

Following gene: 17229026

Centisome position: 27.98

GC content: 44.1

Gene sequence:

>1245_bases
ATGAGTTATTATATCGCTCCGCGTTTTCTGGATAAACTTGCTGTTCACATCACTAAAAACTTTTTGAATATTCCTGGTGT
GCGAGTTCCCTTAATTTTAGGGATTCATGGACGTAAAGGAGAAGGGAAAACCTTTCAATGTGAGTTAGCTTTTGAAAAGA
TGGGTATTGAAGTCACACTCATCTCTGGCGGTGAATTGGAAAGTCCCGATGCGGGAGACCCAGCACGGTTGATTCGGCTG
CGTTATCGGGAAACGGCAGAACTGATCAAAGTGCGCGGTAAAATGTGCGTGCTGATGATTAACGATTTAGATGCAGGTGC
AGGACGCTTTGATGAAGGTACGCAATATACTGTAAATACTCAGTTGGTAAATGCCACGCTGATGAATATTGCTGATAATC
CTACAGATGTGCAGTTACCGGGTAGTTATGATTCCAACCCGATACGGCGTGTCCCCATTATCGTCACAGGTAATGATTTT
TCTACTCTCTACGCGCCATTGATTCGGGATGGACGGATGGAGAAATTCTATTGGGAACCCAACCGTGATGATAAGGTGGG
AATTGTTGGGGGGATTTTTGCGGAAGATGGACTGTCACAACGGGAAATTGAGCAATTAGTTGATACTTTCCCCAAGCAAT
CGATTGACTTTTTTAGCGCTTTACGTTCTCGAATTTACGATATCCAAATCCGCGACTTCATCCATAAAGTCGGGTTTGAA
CGGATATCTTTGCGCGTAGTGAACAGCCTAGAAGCGCCGCCAGAATTTAAAAAGCCAGATTTCAGCCTGGCTCATTTAAT
CGAGTCTGGTAACTTGGTGTTGGGTGAACAACAACGGGTAGATAATTCTCAGTTAGTGGATGAGTATAATCGATTAAATC
GCGGGAGAGGTTATCAAACAGCGCCACCCCCCGAAGCACCAGTGATTCAGCCAGTCAATAATAGTTCTCACAAGCAAAAG
ACATCTAATACTCATTTGAGTTTAGAAACCCAAGAACAAATCCGGCAAATCTTGTCTCAAGGTCACAAAATTACCTTTGA
ACACGTAGATGCACGCCGTTTCCGCACGGGTTCTTGGCAGAGTTGCGGTACTCTGCATATTGATGCAGAGTCAGATGCTA
TTTCAACTTTAGAGGCTTGCTTAGTTGATTATGACGGTGAGTATGTGCGGATGGTAGGGATAGACCCGAAAGGCAAGCGG
CGGGTTGTAGAGACAATTATTCAACGACCAAATGGCAAAAATTAA

Upstream 100 bases:

>100_bases
TTTGTGGTAGTGAGACTAGATATCTACCAAAAGATTAATAAACAATAGATACCAAAAAAACTTAGCATTAGTTAATGAAG
CATCACCAGTCATAAATTTT

Downstream 100 bases:

>100_bases
GCTGTAGAAGTCAGATTTTACCTTACTCAGAGAGGAGTGAGGTAAAACTACTCAGTACTCTTCATATTTTAGAGACTGCA
CCCTCATTATCTCTTCAACA

Product: ribulose 1,5-bisphosphate carboxylase/oxygenase activase

Products: NA

Alternate protein names: RA; RuBisCO activase

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MSYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRL
RYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDF
STLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFE
RISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNRLNRGRGYQTAPPPEAPVIQPVNNSSHKQK
TSNTHLSLETQEQIRQILSQGHKITFEHVDARRFRTGSWQSCGTLHIDAESDAISTLEACLVDYDGEYVRMVGIDPKGKR
RVVETIIQRPNGKN

Sequences:

>Translated_414_residues
MSYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRL
RYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDF
STLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFE
RISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNRLNRGRGYQTAPPPEAPVIQPVNNSSHKQK
TSNTHLSLETQEQIRQILSQGHKITFEHVDARRFRTGSWQSCGTLHIDAESDAISTLEACLVDYDGEYVRMVGIDPKGKR
RVVETIIQRPNGKN
>Mature_413_residues
SYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLR
YRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFS
TLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFER
ISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNRLNRGRGYQTAPPPEAPVIQPVNNSSHKQKT
SNTHLSLETQEQIRQILSQGHKITFEHVDARRFRTGSWQSCGTLHIDAESDAISTLEACLVDYDGEYVRMVGIDPKGKRR
VVETIIQRPNGKN

Specific function: Activation of RuBisCO (ribulose-1,5-bisohosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO activase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RCA_NOSS1 (P58555)

Other databases:

- EMBL:   BA000019
- PIR:   AG1997
- RefSeq:   NP_485573.1
- ProteinModelPortal:   P58555
- SMR:   P58555
- STRING:   P58555
- GeneID:   1105125
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr1533
- NMPDR:   fig|103690.1.peg.1840
- eggNOG:   COG4451
- HOGENOM:   HBG320501
- OMA:   QLPGSYD
- ProtClustDB:   CLSK895536
- BioCyc:   NSP103690:ALR1533-MONOMER
- InterPro:   IPR003959
- InterPro:   IPR000894
- Gene3D:   G3DSA:3.30.190.10
- SMART:   SM00961

Pfam domain/function: PF00004 AAA; PF00101 RuBisCO_small; SSF55239 RuBisCO_small

EC number: NA

Molecular weight: Translated: 46669; Mature: 46537

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTL
CCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEHHCCEEEEE
ISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNT
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEE
QLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP
EEEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEECC
NRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFE
CCCCCEEEEEEEHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEHHHHHHHHHHCHH
RISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNRLNRGRGYQT
HEEEEEHHCCCCCCCCCCCCCHHHHHHCCCCEEECCHHCCCHHHHHHHHHHHHCCCCCCC
APPPEAPVIQPVNNSSHKQKTSNTHLSLETQEQIRQILSQGHKITFEHVDARRFRTGSWQ
CCCCCCCEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECCHHHHCCCCCC
SCGTLHIDAESDAISTLEACLVDYDGEYVRMVGIDPKGKRRVVETIIQRPNGKN
CCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTL
CEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEHHCCEEEEE
ISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNT
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEE
QLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP
EEEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEECC
NRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFE
CCCCCEEEEEEEHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEHHHHHHHHHHCHH
RISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNRLNRGRGYQT
HEEEEEHHCCCCCCCCCCCCCHHHHHHCCCCEEECCHHCCCHHHHHHHHHHHHCCCCCCC
APPPEAPVIQPVNNSSHKQKTSNTHLSLETQEQIRQILSQGHKITFEHVDARRFRTGSWQ
CCCCCCCEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECCHHHHCCCCCC
SCGTLHIDAESDAISTLEACLVDYDGEYVRMVGIDPKGKRRVVETIIQRPNGKN
CCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840