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The map label for this gene is ydcM [C]

Identifier: 17229023

GI number: 17229023

Start: 1792330

End: 1793517

Strand: Direct

Name: ydcM [C]

Synonym: alr1531

Alternate gene names: 17229023

Gene position: 1792330-1793517 (Clockwise)

Preceding gene: 17229021

Following gene: 17229024

Centisome position: 27.95

GC content: 45.96

Gene sequence:

>1188_bases
ATGGAAAAAGCCTACCGCTACCGATTTTACCCAACTGTCGAGCAAGAACAGATATTGCGCCGGACGATTGGTTGTGTGCG
GTTGGTTTTTAACCGAGCATTGGCTTCCCGAACCGAGGCTTGGTATGAGAAGCAAGAACGAGTTGACTACGTTCAAACTT
CGGCTATGTTGACGCACTGGAAAAAGCTTGATGACCTCCAGTTTTTGAATGAGGTTAGCTGTGTACCACTGCAACAAGGC
TTGAGACATCTGCAAACTGCTTTCACCAATTTCTTTGCTGGTAGGGCGCAATATCCCAATTTTAAAAAGAAGCGTAGTGG
TGGTAGCGCAGAGTTTACTAAATCTGCTTTCCGGTGGAAAGATGGGCAAGTCTACTTGGCAAAGTGTTCTGAACCATTGG
TTATTAAATGGTCTAGGCAGTTGCCCAAGGGATGTGAACCTAGTACCATCACAGTTAGACTTGAACCGAATGGACGCTGG
TTTGTCAGCTTGCGAATCAATGATCCAACCGACCAAACCATGCAACCAGTTGATAGTGCTGTTGGTTTGGATGTTGGGGT
TAGTTCTCTCGTTACCCTGAGTACAGGTGAAAAGATTGCTAACCCCAAGGCATATGAGGCGCACTACCAAAGGTTGTCTA
AGGCACAGAAGTCTTTGAGCCGTAAACAGAAAGCCTCTCGAAATTGGGATAAGGCAAGACTCAAAGTAGCTCGTCTTCAA
GCTAAAATTTCTGACTCTAGAAAAGACCATTTGCACAAACTGACAACTCGACTGGTTCGTGAAAACCAAACGATAGTGGT
TGAGGATTTGGCGGTTAAGAATATGGTCAAAAATCCCAAGCTTGCCCGTGCTATCAGTGATGCTGCATGGTCGGAATTGG
TAAGACAACTGGATTACAAAGCCAAGTGGTATGGTCGAAACTTGGTAAAGATTGACCGTTGGTTTCCTAGCTCTAAACGC
TGCGGAAACTGTGGGCATATTGTTGATAAACTGCCGTTGAATGTTAGAGAGTGGGATTGTCCCAACTGCGGAACACACCA
CGACAGGGATATCAACGCCAGCCGGAATATTTTGGCGGTGGGACACACCGTTACAGTCTGTGGAGCGAACATAAGACCTA
ATAGCCATAGTGTTAAAGGGCAGTTGCAAAAAACCCGCAAGGGAAGGAAACAGAAACCTAAGTCGTGA

Upstream 100 bases:

>100_bases
CCACCAAACAATAAAGCTTTCATCAGAAAAATGGGTAGAAACCCAGTCCTTGAGCGATAGCGGAGGACGGCTTTACAGGG
AATATGGTAAAATGTGAGGT

Downstream 100 bases:

>100_bases
GTCTTAGGAATCACCGCACTTTCAGGGCGGTGAGGATGTCAAACAGTTACCTAGTTTTAATTCCAGCTTTACTTAGGCGT
TAGCCCTTCATCATCAGGAA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MEKAYRYRFYPTVEQEQILRRTIGCVRLVFNRALASRTEAWYEKQERVDYVQTSAMLTHWKKLDDLQFLNEVSCVPLQQG
LRHLQTAFTNFFAGRAQYPNFKKKRSGGSAEFTKSAFRWKDGQVYLAKCSEPLVIKWSRQLPKGCEPSTITVRLEPNGRW
FVSLRINDPTDQTMQPVDSAVGLDVGVSSLVTLSTGEKIANPKAYEAHYQRLSKAQKSLSRKQKASRNWDKARLKVARLQ
AKISDSRKDHLHKLTTRLVRENQTIVVEDLAVKNMVKNPKLARAISDAAWSELVRQLDYKAKWYGRNLVKIDRWFPSSKR
CGNCGHIVDKLPLNVREWDCPNCGTHHDRDINASRNILAVGHTVTVCGANIRPNSHSVKGQLQKTRKGRKQKPKS

Sequences:

>Translated_395_residues
MEKAYRYRFYPTVEQEQILRRTIGCVRLVFNRALASRTEAWYEKQERVDYVQTSAMLTHWKKLDDLQFLNEVSCVPLQQG
LRHLQTAFTNFFAGRAQYPNFKKKRSGGSAEFTKSAFRWKDGQVYLAKCSEPLVIKWSRQLPKGCEPSTITVRLEPNGRW
FVSLRINDPTDQTMQPVDSAVGLDVGVSSLVTLSTGEKIANPKAYEAHYQRLSKAQKSLSRKQKASRNWDKARLKVARLQ
AKISDSRKDHLHKLTTRLVRENQTIVVEDLAVKNMVKNPKLARAISDAAWSELVRQLDYKAKWYGRNLVKIDRWFPSSKR
CGNCGHIVDKLPLNVREWDCPNCGTHHDRDINASRNILAVGHTVTVCGANIRPNSHSVKGQLQKTRKGRKQKPKS
>Mature_395_residues
MEKAYRYRFYPTVEQEQILRRTIGCVRLVFNRALASRTEAWYEKQERVDYVQTSAMLTHWKKLDDLQFLNEVSCVPLQQG
LRHLQTAFTNFFAGRAQYPNFKKKRSGGSAEFTKSAFRWKDGQVYLAKCSEPLVIKWSRQLPKGCEPSTITVRLEPNGRW
FVSLRINDPTDQTMQPVDSAVGLDVGVSSLVTLSTGEKIANPKAYEAHYQRLSKAQKSLSRKQKASRNWDKARLKVARLQ
AKISDSRKDHLHKLTTRLVRENQTIVVEDLAVKNMVKNPKLARAISDAAWSELVRQLDYKAKWYGRNLVKIDRWFPSSKR
CGNCGHIVDKLPLNVREWDCPNCGTHHDRDINASRNILAVGHTVTVCGANIRPNSHSVKGQLQKTRKGRKQKPKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=370, Percent_Identity=32.972972972973, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45363; Mature: 45363

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKAYRYRFYPTVEQEQILRRTIGCVRLVFNRALASRTEAWYEKQERVDYVQTSAMLTHW
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKLDDLQFLNEVSCVPLQQGLRHLQTAFTNFFAGRAQYPNFKKKRSGGSAEFTKSAFRWK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHCCC
DGQVYLAKCSEPLVIKWSRQLPKGCEPSTITVRLEPNGRWFVSLRINDPTDQTMQPVDSA
CCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHH
VGLDVGVSSLVTLSTGEKIANPKAYEAHYQRLSKAQKSLSRKQKASRNWDKARLKVARLQ
HCCCCCHHHEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AKISDSRKDHLHKLTTRLVRENQTIVVEDLAVKNMVKNPKLARAISDAAWSELVRQLDYK
HHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
AKWYGRNLVKIDRWFPSSKRCGNCGHIVDKLPLNVREWDCPNCGTHHDRDINASRNILAV
HHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
GHTVTVCGANIRPNSHSVKGQLQKTRKGRKQKPKS
CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEKAYRYRFYPTVEQEQILRRTIGCVRLVFNRALASRTEAWYEKQERVDYVQTSAMLTHW
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKLDDLQFLNEVSCVPLQQGLRHLQTAFTNFFAGRAQYPNFKKKRSGGSAEFTKSAFRWK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHCCC
DGQVYLAKCSEPLVIKWSRQLPKGCEPSTITVRLEPNGRWFVSLRINDPTDQTMQPVDSA
CCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHH
VGLDVGVSSLVTLSTGEKIANPKAYEAHYQRLSKAQKSLSRKQKASRNWDKARLKVARLQ
HCCCCCHHHEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AKISDSRKDHLHKLTTRLVRENQTIVVEDLAVKNMVKNPKLARAISDAAWSELVRQLDYK
HHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
AKWYGRNLVKIDRWFPSSKRCGNCGHIVDKLPLNVREWDCPNCGTHHDRDINASRNILAV
HHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
GHTVTVCGANIRPNSHSVKGQLQKTRKGRKQKPKS
CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]