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The map label for this gene is rbcL [H]

Identifier: 17229016

GI number: 17229016

Start: 1785970

End: 1787400

Strand: Direct

Name: rbcL [H]

Synonym: alr1524

Alternate gene names: 17229016

Gene position: 1785970-1787400 (Clockwise)

Preceding gene: 17229013

Following gene: 17229017

Centisome position: 27.85

GC content: 48.71

Gene sequence:

>1431_bases
ATGTCTTACGCTCAAACGAAGACTCAGACAAAATCTGGGTATAAAGCCGGGGTTCAAGATTACAGACTAACTTATTACAC
ACCTGATTACACACCTAAAGATACAGATATTCTGGCGGCGTTCCGTGTTACACCCCAGCCCGGAGTTCCCTTTGAGGAAG
CGGCTGCGGCTGTAGCGGCTGAGTCTTCTACTGGTACTTGGACGACCGTATGGACAGACCTGTTAACCGATCTAGATCGT
TACAAAGGTCGTTGCTACGATATCGAACCAGTTCCCGGCGAAGACAACCAATTCATTGCCTACATCGCTTATCCTTTGGA
TCTGTTTGAAGAAGGCTCCATCACCAACGTTTTGACCTCAATTGTAGGTAACGTATTTGGTTTTAAAGCATTACGCGCAT
TGCGTTTGGAAGACATTCGCTTTCCTGTTGCTTACATCAAGACCTTCCAAGGCCCTCCTCACGGTATCCAAGTTGAGCGT
GACAAATTAAACAAATATGGTCGTCCTCTGTTGGGTTGTACCATCAAACCAAAATTAGGTCTGTCTGCTAAGAACTACGG
ACGCGCTGTATACGAGTGTTTGCGCGGTGGTTTGGACTTCACCAAAGACGACGAAAACATTAACTCCGCACCATTCCAAA
GATGGCGCGATCGCTTCTTGTTTGTAGCTGATGCTATCACCAAAGCACAAGCAGAAACAGGCGAAATCAAAGGTCACTAC
CTAAACGTGACCGCTCCTACCTGTGAAGAAATGCTAAAACGGGCTGAGTACGCTAAAGAACTCAAACAGCCCATCATCAT
GCACGACTACCTGACCGCAGGTTTCACAGCTAACACCACCTTGGCTCGTTGGTGTCGTGACAACGGCGTTCTACTGCACA
TCCACCGCGCGATGCACGCAGTAATCGACCGTCAAAAGAACCACGGTATCCACTTCCGTGTATTGGCTAAAGCCCTACGT
CTATCTGGTGGTGACCACATCCACACCGGTACCGTAGTAGGTAAATTGGAAGGTGAACGCGGTATCACAATGGGCTTCGT
TGACCTACTACGTGAAAACTACGTTGAGCAAGACAAGTCTCGCGGTATTTACTTTACCCAAGACTGGGCTTCTCTACCTG
GTGTAATGGCAGTTGCTTCCGGTGGTATCCACGTATGGCATATGCCAGCGTTGGTAGAAATCTTCGGTGATGACTCCGTA
CTACAATTCGGTGGTGGTACACTCGGACACCCTTGGGGTAACGCTCCTGGTGCAACCGCTAACCGTGTAGCTTTGGAAGC
TTGCGTCCAAGCACGTAACGAAGGTCGTAACTTGGCTCGTGAAGGTAACGACGTTATCCGTGAAGCTGCTAAGTGGTCTC
CTGAATTGGCTGTCGCTTGCGAACTGTGGAAAGAAATCAAGTTCGAGTTTGAGGCAATGGATACCGTCTGA

Upstream 100 bases:

>100_bases
TTTTTCTCCTGGCTGATAGGGAGGTAGGGCAATTGTGAGAGGAAATTGTACCAAAACGTGATTTGATAAGTAAAAAGAGT
GACATCTTGGAAGGATAGAT

Downstream 100 bases:

>100_bases
TAAAGGCTGAAGATGCAAGGATGAAGGTTAAATGAAAAATACCTTTCATCCTTACATTCTTTAAACTTCATCCTTTTAAA
GGGCTGGGTCAAGCATGAAT

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSYAQTKTQTKSGYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAESSTGTWTTVWTDLLTDLDR
YKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTSIVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVER
DKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVADAITKAQAETGEIKGHY
LNVTAPTCEEMLKRAEYAKELKQPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKALR
LSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKSRGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSV
LQFGGGTLGHPWGNAPGATANRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACELWKEIKFEFEAMDTV

Sequences:

>Translated_476_residues
MSYAQTKTQTKSGYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAESSTGTWTTVWTDLLTDLDR
YKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTSIVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVER
DKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVADAITKAQAETGEIKGHY
LNVTAPTCEEMLKRAEYAKELKQPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKALR
LSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKSRGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSV
LQFGGGTLGHPWGNAPGATANRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACELWKEIKFEFEAMDTV
>Mature_475_residues
SYAQTKTQTKSGYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAESSTGTWTTVWTDLLTDLDRY
KGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTSIVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVERD
KLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVADAITKAQAETGEIKGHYL
NVTAPTCEEMLKRAEYAKELKQPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKALRL
SGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKSRGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSVL
QFGGGTLGHPWGNAPGATANRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACELWKEIKFEFEAMDTV

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 53046; Mature: 52915

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAQTKTQTKSGYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAA
CCCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHC
ESSTGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTS
CCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHH
IVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEHHHHHHCCCCEEEEEECCCCC
LSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVADAITKAQAETGEIKGHY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCCCEE
LNVTAPTCEEMLKRAEYAKELKQPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHA
EEECCHHHHHHHHHHHHHHHHHCCCEEHHHHHCCCCCCHHHHHHHCCCCEEEEHHHHHHH
VIDRQKNHGIHFRVLAKALRLSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKS
HHHHHCCCCCHHHHHHHHHHCCCCCEEEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
RGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGNAPGATA
CCEEEECCHHHCCCEEEHHCCCEEEEEHHEEHHHHCCCCEEEECCCCCCCCCCCCCCCCH
NRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACELWKEIKFEFEAMDTV
HHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SYAQTKTQTKSGYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAA
CCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHC
ESSTGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTS
CCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHH
IVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEHHHHHHCCCCEEEEEECCCCC
LSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVADAITKAQAETGEIKGHY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCCCEE
LNVTAPTCEEMLKRAEYAKELKQPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHA
EEECCHHHHHHHHHHHHHHHHHCCCEEHHHHHCCCCCCHHHHHHHCCCCEEEEHHHHHHH
VIDRQKNHGIHFRVLAKALRLSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKS
HHHHHCCCCCHHHHHHHHHHCCCCCEEEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
RGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGNAPGATA
CCEEEECCHHHCCCEEEHHCCCEEEEEHHEEHHHHCCCCEEEECCCCCCCCCCCCCCCCH
NRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACELWKEIKFEFEAMDTV
HHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA