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The map label for this gene is ykfC [H]

Identifier: 17228961

GI number: 17228961

Start: 1729649

End: 1731655

Strand: Direct

Name: ykfC [H]

Synonym: alr1468

Alternate gene names: 17228961

Gene position: 1729649-1731655 (Clockwise)

Preceding gene: 17228955

Following gene: 17228962

Centisome position: 26.97

GC content: 39.66

Gene sequence:

>2007_bases
ATGTTCACTATTGAACACCTCAATTTCGCATGGTTACAAGTGCGTGCGGGAAGTAAAAGCGCGGGTGTTGATGGAATTTC
TGTTGATTTGTTCGAGTCGATGGCGACGGAACAATTACAGAATATCGCCTATCAACTCAAGGAAGAAACTTATACAGCCA
ATCCCGCCAAAGGGTTTTATATACCTAAAAAAAATGGCACTAAACGCTTAATTGGTATCCATACTGTGCGGGATAGAATT
ATCCAGCGTTTACTACTTGATGAGTTGTATTTTCCTTTAGAAGATACTTTTCTTGATTGCAGCTATGCTTATCGTCCTGG
GCATAGTATTCAGCAAGCAGTACAGCATTTATATGGGTATTACCAATATCAACCAAAATGGATAATCAAAGCTGATGTTG
CTGATTTTTTTGATAATCTTTCTTGGGCATTGTTGTTAACTTATTTGGAGGAATTATCCCTTGAACCGAGTTTATTACAG
TTGCTAGAACAACAGTTGAAGTCAGGAATTATCATTGCTGGACAATATCGTAACTTTGGTAAGGGAGTTTTACAAGGTGG
AATACTTTCTGGGGCTTTAGCTAATTTATATCTCACGAGTTTTGATCGAAAATGTCTCAGCCAAGGAATTAACTTAGTCA
GGTATGGTGATGATTTTGTTATCGCTTGTAATAGTTGGCTAGAAGCAAACCGCATCCTTGACAAAATTACTGGCTGGTTA
GGGGAAGTTTATTTAACTCTCCAACCAGAGAAAACACAGATTTTCACTCCTAATGATGAGTTTACTTTTTTGGGTTATCG
CTTTGCTGGCGGCGAAGTTTATGCACCACCACCACCCGAACCTGTGCGCCCTGGGGAGTGGGTAATCAATGATTCGGGTA
CGCCTTATTTCCGATTGAAACCTAAACCAAGAAAACCAGTTTCTCATCCTCCGAAAGCTTGCAGTATTGACAAACCAATT
AATTTTCCTAAAGCATCTTTATCTCATTATTGGCAGGAAACCATGACTACTTTATATATAACAGACCAAGGCGCATATTT
AAGTGTAAAAAATCAGCAGTTCCAAGTTTTTCATCAGGGAGAATTGCGAATAAAAGTCCCAGTGATGCGGGTGAGTAATG
TGGTGTTGTTTGGTTGTTGTAATGTATCGCATGGTGCTGTGAGTATGGCGTTGCGGCGACGAATTCCGATTATGTATTTG
TCACAGAAGGGTAGGTATTTTGGCAGGTTGCAAACAGAAGGTGATGCTAAGGTTGAATATTTGATGTTACAAGTTGAGCG
TTGTCAAAATCATGAATTTACCAGAAAGCAAGCTGAGGCGATAGTTCGGGCGAAATTGCATAATTCCCGTGCATTATTGT
TAAAATTAAATCGTCGTCATCCCTCAAAAATTGCTGCGACAGCAATTAGTGGAATTGCCGAATTGATGGAGAAGTTAAGT
TTGGCTGAAAGTATGGATTCGTTGCGGGGATATGAGGGAAAAGCAGCGACTTTATACTTTCAAGGTTTGGGTTCTCTGTT
TACAGGAGCGTTTGTCTTTGAGAAACGTACCAAGCGTCCACCAACAGATCCAGTTAATAGCTTGTTAAGTTTGGGATATA
CTTTATTAAGTCAAAATGTCTTCTCATTTGTACAAGTAATTGGGTTACATACCCACTTTGGTAATCTGCACGTTCCCCGT
GATAATCACCCAGCTTTAGTGAGTGATTTAATGGAAGAATTTCGCGCTCAACTAGTTGATTCTCTAGTGGCATATTTAAT
TAATTCCAAGATTTTTACATTTGAAGATTTCACTCCTCCAGATGAAAAAGGCGGTGTATATCTGCAACCTCACGCCTTAA
AAAAGTTTCTCAAACATTGGGAAGAGAAATTGCAATCGGAGGTAACGCATCCCCATACAGGATATCAAGTCAGCCTACGC
CGTTGTTTGGAATTACAGGTCAGGGAATATATCACTTCATTAACGGGAGAAGTTGAGTTATACCGACCGATGATTTGGAA
GTTGTAA

Upstream 100 bases:

>100_bases
TCAAAGGTAATACCCAGATCCCCGACTTCTTAAAGAAGTCGGGGATCTAAATCCAACGTACCACTTTTGCCTTTTAACTT
TTAACTTTTAACTTATCACC

Downstream 100 bases:

>100_bases
TGAGGAGCGCGAAAGAAAAAAGAGCAATCTGTAAGTTTTAATTTTCCGTTTTGTAGCCGAGATTTTTACCCCTCTCCATA
GCTTACCTCTCTTACCGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFYIPKKNGTKRLIGIHTVRDRI
IQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQ
LLEQQLKSGIIIAGQYRNFGKGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWL
GEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLKPKPRKPVSHPPKACSIDKPI
NFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQGELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYL
SQKGRYFGRLQTEGDAKVEYLMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLS
LAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNVFSFVQVIGLHTHFGNLHVPR
DNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLR
RCLELQVREYITSLTGEVELYRPMIWKL

Sequences:

>Translated_668_residues
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFYIPKKNGTKRLIGIHTVRDRI
IQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQ
LLEQQLKSGIIIAGQYRNFGKGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWL
GEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLKPKPRKPVSHPPKACSIDKPI
NFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQGELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYL
SQKGRYFGRLQTEGDAKVEYLMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLS
LAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNVFSFVQVIGLHTHFGNLHVPR
DNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLR
RCLELQVREYITSLTGEVELYRPMIWKL
>Mature_668_residues
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFYIPKKNGTKRLIGIHTVRDRI
IQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQ
LLEQQLKSGIIIAGQYRNFGKGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWL
GEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLKPKPRKPVSHPPKACSIDKPI
NFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQGELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYL
SQKGRYFGRLQTEGDAKVEYLMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLS
LAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNVFSFVQVIGLHTHFGNLHVPR
DNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLR
RCLELQVREYITSLTGEVELYRPMIWKL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=330, Percent_Identity=23.030303030303, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 76201; Mature: 76201

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFY
CEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
IPKKNGTKRLIGIHTVRDRIIQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGY
EECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEECCEECCCCCHHHHHHHHHHHHH
YQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQLLEQQLKSGIIIAGQYRNFG
EEECCEEEEEECHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCC
KGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWL
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHH
GEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLK
EEEEEEEECCCCEEECCCCCEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCEEEEEC
PKPRKPVSHPPKACSIDKPINFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCEEEECCCEEEEEECC
ELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYLSQKGRYFGRLQTEGDAKVEY
CEEEEEEHEEECCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCHHHH
LMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLS
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
LAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNV
HHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FSFVQVIGLHTHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPP
HHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
DEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLRRCLELQVREYITSLTGEVEL
CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
YRPMIWKL
ECHHHHCC
>Mature Secondary Structure
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFY
CEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
IPKKNGTKRLIGIHTVRDRIIQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGY
EECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEECCEECCCCCHHHHHHHHHHHHH
YQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQLLEQQLKSGIIIAGQYRNFG
EEECCEEEEEECHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCC
KGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWL
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHH
GEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLK
EEEEEEEECCCCEEECCCCCEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCEEEEEC
PKPRKPVSHPPKACSIDKPINFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCEEEECCCEEEEEECC
ELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYLSQKGRYFGRLQTEGDAKVEY
CEEEEEEHEEECCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCHHHH
LMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLS
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
LAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNV
HHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FSFVQVIGLHTHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPP
HHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
DEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLRRCLELQVREYITSLTGEVEL
CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
YRPMIWKL
ECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]