| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is hypF [H]
Identifier: 17228189
GI number: 17228189
Start: 800536
End: 802893
Strand: Direct
Name: hypF [H]
Synonym: alr0694
Alternate gene names: 17228189
Gene position: 800536-802893 (Clockwise)
Preceding gene: 17228188
Following gene: 17228190
Centisome position: 12.48
GC content: 40.2
Gene sequence:
>2358_bases ATGGCGACTGAGGAAATTCGAGTGCGGGGAACTGTGCAGGGAGTGGGGTTTCGTCCCACTGTGTATCGTCTGGCGAAAGC TTGCGGGTTGCGGGGGGATGTTTGTAATGATGGGGAAGGGGTGTTAATTCGGGTATGTGGTGATGAAGGGGCTTTGACGG AGTTTGTCGCTAGATTGCAGCAGGAATGTCCACCACTGGCGAAAATTAATGAACTCATCAGGACACCATATCAAGGTGAG TTAAACTTCCATGATTTTGTCATTTCTCATAGTGTTAGTGGCGTGGTAAGAACGGAAATTACTCCTGATGCGGCTACTTG TCCGGAATGTCAGCGAGAAATTTTTGACCCCTTTAGCCGTTTTTACCGTTATCCCTTTACTAACTGTACTCATTGCGGCC CCCGGTTGAGTATTATTCGCGCCATTCCTTATGACAGATGTAATACCAGTATGTCTGCGTTTGTCATGTGTCCCGAATGT GAGGACTCATACCACGATGTGGAAAATCGCCGCTTTCACGCCCAACCTGTAGCCTGTCACACCTGCGGCCCCAAGGCTTG GCTAGAAAGGGCTGATGGTAAACCTGTGACGGCTTCTATGTTTTCTATGTTGGATGATGTGGATGCTGTTTGTACTTTGT TACAGAAGGGTGAAATTGTTGCTATTAAGGGAATTGGTGGTTTTCATTTAGCTTGTGATGCAACGCAAGAAGCGGCTGTG GAGAAATTGCGTCAACGTAAGCGAAGATATGATAAGCCTTTTGCTTTGATGGCACGGGATATTAATGTTATTGAAAAATA TTGCTTTGTTAATGATAGGGAACGGGAGTTATTAGTTAGTCCTGCTGCACCAATTGTTTTGTTAGAAAAAAGGACAGAGG AAATAAGTTCTTTCCCTATCGCTTCCACTGTCGCACCTGGGCAAAATACCCTCGGTTTCATGCTACCTTATACGCCTTTG CATCATTTGATTCTCAAGCGGATGAATCGCCCGATTGTTTTGACAAGTGGCAATATTGCTGATGAACCACAATGTGTTGC TAATGATGAAGCAAAAGAAAAATTAAGTCATATAGCTGATTATTTTCTTTTACATAATCGGGAGATTGTGAATAGAGTTG ATGATTCAGTTGTGCGGGTGATTGATAATAAAATTCAAATCATGCGTCGTGCTAGGGGCTATGCGCCAGCACCGATAAAA TTACCACCAGGATTTGATAATATTCCCCAAATTCTAGCGATGGGTAGTGAGTTAAAAAATACCTTTTGTTTATTGAGGGA AGGCGAGGCAATTCTATCTCAACATTTGGGTGATTTAGAAAATGCTTTGGCGTTTGATTGTTATCAAGATACATTGAATT TATATCTAAATTTATTTCAACATCAACCAGAAGTAATTGCGGTTGATTTACATCCTGAATATCTCTCAACAAAACTTGGT AAAGAATTAGCCACAGCTAACCAAATTCAACTGCAATTTATTCAACATCATCATGCCCATATTGCTGCTTGTATGGCAGA AAATGGTATTCCTTTAGATTCGTCACCAGTTTTAGGTATTGCTTTTGACGGATTGGGTTATGGTACAGATGGTAAACTTT GGGGGGGAGAATTTCTTTTAGCTGATTATACTCAATTTCAACGCCTGGCTACATTTAAACCAGTGGCAATGATTGGTGGC AAACAAGCAATTTATCAGCCTTGGCGTAATACATACTCTCATTTACTAAGTGCCAATATTTGGGATGATTGCCAACAAAA TTACAATAATTGGGAAATTATTAAATTTTTACAACAACAGCCGATAAATCTCCTCAATCAACTTGTAGAAAAAGGTATTA ATACTCCTTTAGCTTCTTCTGTAGGAAGGCTATTTGATGCTGTGGCTGGGGCTATCGGCATTTGTTCAGAAAAATGTAGC TATGAAGGACAAGCAGCGATCGCACTAGAAGCTATAGCCGACATTCACACATTAAATAATCCTAAAGAAACAGCAATTTA TCCCTTTAAGTTTACCTTTTCCGATAATATTTATTGTATAGACTCATGCCTCATGTGGCCATTATTGCTTGATGACTTAC AGCAGCATACTCCTCAATCAGTTATCGCTGCCAAATTTCATTTAAGTTTATCTAATGTCATTGTGGAGACAGTCAAGTAT CTCGGTCAACAAAACTTATTTAATCAAGTCGCCTTAACAGGAGGAGTTTTTCAAAATAGTATCTTATTACAACTAGTCAC TAAGCAGTTACAAAATTTAGGAATCAAGGTACTCGCCCATAGTGTAGTTCCTACAAACGACGGTGGTTTATCACTAGGTC AAGCAATAATTACGGCCGCAAGATTAATTAAACAATAG
Upstream 100 bases:
>100_bases ACGCAGCGAAAAGTTCTGAAGGAGGGTTTCCCTCCGTAGGAAACTTTTCAAGACAGAGGGGCGCTGAGGTAGGCGCGGAG GGGCGCGGAGAGGAGTTTTT
Downstream 100 bases:
>100_bases ATATTCAATATTTTTCAGTATCTCTTAAAAACACCTCCCTACGCCTCTGCGTGAAAAAATATTTATTGCGAATTGCGAAT TGGTTTTATCTCTCCAATAA
Product: hydrogenase maturation protein
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 785; Mature: 784
Protein sequence:
>785_residues MATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQQECPPLAKINELIRTPYQGE LNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPEC EDSYHDVENRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAV EKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLPYTPL HHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIK LPPGFDNIPQILAMGSELKNTFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLG KELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLLADYTQFQRLATFKPVAMIGG KQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQPINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCS YEGQAAIALEAIADIHTLNNPKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKY LGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAARLIKQ
Sequences:
>Translated_785_residues MATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQQECPPLAKINELIRTPYQGE LNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPEC EDSYHDVENRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAV EKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLPYTPL HHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIK LPPGFDNIPQILAMGSELKNTFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLG KELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLLADYTQFQRLATFKPVAMIGG KQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQPINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCS YEGQAAIALEAIADIHTLNNPKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKY LGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAARLIKQ >Mature_784_residues ATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQQECPPLAKINELIRTPYQGEL NFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPECE DSYHDVENRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAVE KLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLPYTPLH HLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIKL PPGFDNIPQILAMGSELKNTFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLGK ELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLLADYTQFQRLATFKPVAMIGGK QAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQPINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCSY EGQAAIALEAIADIHTLNNPKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKYL GQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAARLIKQ
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=781, Percent_Identity=41.2291933418694, Blast_Score=541, Evalue=1e-155,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 87412; Mature: 87281
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQ CCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH QECPPLAKINELIRTPYQGELNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSR HHCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH FYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPECEDSYHDVENRRFHAQPVACH HHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCEEECCCEEEE TCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAV CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHH EKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEHHHHHHHCCCC ASTVAPGQNTLGFMLPYTPLHHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIAD HHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH YFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIKLPPGFDNIPQILAMGSELKN HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHH TFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH KELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEECCCEEE ADYTQFQRLATFKPVAMIGGKQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQ HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHC PINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCSYEGQAAIALEAIADIHTLNN CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC PKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKY CCCCEEEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAA HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH RLIKQ HHHCC >Mature Secondary Structure ATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQ CCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH QECPPLAKINELIRTPYQGELNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSR HHCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH FYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPECEDSYHDVENRRFHAQPVACH HHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCEEECCCEEEE TCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAV CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHH EKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEHHHHHHHCCCC ASTVAPGQNTLGFMLPYTPLHHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIAD HHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH YFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIKLPPGFDNIPQILAMGSELKN HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHH TFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH KELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEECCCEEE ADYTQFQRLATFKPVAMIGGKQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQ HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHC PINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCSYEGQAAIALEAIADIHTLNN CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC PKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKY CCCCEEEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAA HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH RLIKQ HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8497190; 9492269 [H]