| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is 17227836
Identifier: 17227836
GI number: 17227836
Start: 389300
End: 390490
Strand: Direct
Name: 17227836
Synonym: alr0340
Alternate gene names: NA
Gene position: 389300-390490 (Clockwise)
Preceding gene: 17227832
Following gene: 17227840
Centisome position: 6.07
GC content: 43.24
Gene sequence:
>1191_bases ATGCCTAGCCTCAAACTCTCGCTGACTGGATTGCAAATCATCAAACAAGCTCGAAGCGAAAAAGGTTGGACAATTGATAA TCCATGTTGGTTAGAACAAGCAAGCCAAATTCTTGAGCCTGGGCGTAACTGGGAAAATGCGGAAGTTTTTGCAGCCGGAG TATCTTTAGCCACCTGGAAACGCTTCCTCAAAGGTGATGCAATTGATGCGTCGGTATTTAAAGCTTTTTGTCAGGTTTTG GGATTGAATTGGCAAGACTTAGTGGAACGTCCCTCCAACTCATTCATCATTGAGACAACCCAAATCCCCAATATTCCCTT ATTTTTTGGACGACGTTATGAACTGACAACACTCAGCCAAGCAATTGAACAAGGAACACGCCTAATTGCTATTACAGGGA TTGGGGGTATGGGGAAAACGGCTTTAGCCACAAAGTTAGTAGAAAGCAGGTCATCTCATTTTTCTCAAACTCTATGGTTT TCGTTTCACCACAACCCACCTGCTAAGGATAAAGTACCAACTTTGGTACCGCACAACCTAATGGTTTTTGATGGTTGGGA TAGCATTTTAGGGGGTAAACGTGGGGGACAGTATCGCCCAGAATATGAACCATACGCCGACTTTCTCCGCACTGTAGTAC AGACTACTCATAATAGTTGTGTGATTATCACTAGCCGAGAACAACCAGAGGGGTTAAATATTTTAAGTGCTGGAGGCGCA GTTATTTTCCCCCTTGGTGGACTGATGGAAGGTGCAATTGAACTGTTGCAACATCATCAACTGACTTTTGATGCTCAACA GTGGATTACTCTAGTTAATCAATATGGTGGTAATCCCTTGTTTCTGAATATGGCGGCTAATTTCATTCATGAATTATTTG CTGGGGATGTGGGAGAGTTTTTAGCCTCTGGAACCTTAGTGGCTGGAGAATTTGCCCCCCTAGTAACGCAATGGCTGAAG CAGATTTCTACTTTAGAACAAATCCTGATCAAGTCTTTGGCGACAAAGGTGCAAGGATTGACTCGCCAAGAGATCCTATT GCAATTAGCTAGTGATGCTGCCAATGGGGATATTTTAGCAGCGCTCTTATCCTTAAAGCGGAGGGGGTTGATAGAAACGA TGAAAGATAGTGAACTAGAACGCTTTTATTTACAGCCAGTCATTCTCAAGTGCGTGCAGCGTTTATTTTAA
Upstream 100 bases:
>100_bases CTTAGACATAAAAAATATCTCAGGCGATCGCCCCCATAATTTTCCAGACTAATCTAGAATTAAACTGGATGAATTTGCTA CACCTTCCTACTCATATCCA
Downstream 100 bases:
>100_bases CCACCACCACCGCCGCCACCACCGCCGCCACCACCGCCTCCTCCTCCACCACCACCGCCACCATCACTGCTTCCATCACT TCCGTAACTAACACTAACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MPSLKLSLTGLQIIKQARSEKGWTIDNPCWLEQASQILEPGRNWENAEVFAAGVSLATWKRFLKGDAIDASVFKAFCQVL GLNWQDLVERPSNSFIIETTQIPNIPLFFGRRYELTTLSQAIEQGTRLIAITGIGGMGKTALATKLVESRSSHFSQTLWF SFHHNPPAKDKVPTLVPHNLMVFDGWDSILGGKRGGQYRPEYEPYADFLRTVVQTTHNSCVIITSREQPEGLNILSAGGA VIFPLGGLMEGAIELLQHHQLTFDAQQWITLVNQYGGNPLFLNMAANFIHELFAGDVGEFLASGTLVAGEFAPLVTQWLK QISTLEQILIKSLATKVQGLTRQEILLQLASDAANGDILAALLSLKRRGLIETMKDSELERFYLQPVILKCVQRLF
Sequences:
>Translated_396_residues MPSLKLSLTGLQIIKQARSEKGWTIDNPCWLEQASQILEPGRNWENAEVFAAGVSLATWKRFLKGDAIDASVFKAFCQVL GLNWQDLVERPSNSFIIETTQIPNIPLFFGRRYELTTLSQAIEQGTRLIAITGIGGMGKTALATKLVESRSSHFSQTLWF SFHHNPPAKDKVPTLVPHNLMVFDGWDSILGGKRGGQYRPEYEPYADFLRTVVQTTHNSCVIITSREQPEGLNILSAGGA VIFPLGGLMEGAIELLQHHQLTFDAQQWITLVNQYGGNPLFLNMAANFIHELFAGDVGEFLASGTLVAGEFAPLVTQWLK QISTLEQILIKSLATKVQGLTRQEILLQLASDAANGDILAALLSLKRRGLIETMKDSELERFYLQPVILKCVQRLF >Mature_395_residues PSLKLSLTGLQIIKQARSEKGWTIDNPCWLEQASQILEPGRNWENAEVFAAGVSLATWKRFLKGDAIDASVFKAFCQVLG LNWQDLVERPSNSFIIETTQIPNIPLFFGRRYELTTLSQAIEQGTRLIAITGIGGMGKTALATKLVESRSSHFSQTLWFS FHHNPPAKDKVPTLVPHNLMVFDGWDSILGGKRGGQYRPEYEPYADFLRTVVQTTHNSCVIITSREQPEGLNILSAGGAV IFPLGGLMEGAIELLQHHQLTFDAQQWITLVNQYGGNPLFLNMAANFIHELFAGDVGEFLASGTLVAGEFAPLVTQWLKQ ISTLEQILIKSLATKVQGLTRQEILLQLASDAANGDILAALLSLKRRGLIETMKDSELERFYLQPVILKCVQRLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 15 WD repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR020472 - InterPro: IPR002182 - InterPro: IPR015943 - InterPro: IPR001680 - InterPro: IPR011046 - InterPro: IPR019782 - InterPro: IPR019775 - InterPro: IPR017986 - InterPro: IPR019781 [H]
Pfam domain/function: PF00931 NB-ARC; PF00400 WD40 [H]
EC number: NA
Molecular weight: Translated: 43979; Mature: 43848
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSLKLSLTGLQIIKQARSEKGWTIDNPCWLEQASQILEPGRNWENAEVFAAGVSLATWK CCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHH RFLKGDAIDASVFKAFCQVLGLNWQDLVERPSNSFIIETTQIPNIPLFFGRRYELTTLSQ HHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCCCCCEECCCCCHHHHHHH AIEQGTRLIAITGIGGMGKTALATKLVESRSSHFSQTLWFSFHHNPPAKDKVPTLVPHNL HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCE MVFDGWDSILGGKRGGQYRPEYEPYADFLRTVVQTTHNSCVIITSREQPEGLNILSAGGA EEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCE VIFPLGGLMEGAIELLQHHQLTFDAQQWITLVNQYGGNPLFLNMAANFIHELFAGDVGEF EEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCHHHH LASGTLVAGEFAPLVTQWLKQISTLEQILIKSLATKVQGLTRQEILLQLASDAANGDILA HHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH ALLSLKRRGLIETMKDSELERFYLQPVILKCVQRLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure PSLKLSLTGLQIIKQARSEKGWTIDNPCWLEQASQILEPGRNWENAEVFAAGVSLATWK CCCEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHH RFLKGDAIDASVFKAFCQVLGLNWQDLVERPSNSFIIETTQIPNIPLFFGRRYELTTLSQ HHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCCCCCEECCCCCHHHHHHH AIEQGTRLIAITGIGGMGKTALATKLVESRSSHFSQTLWFSFHHNPPAKDKVPTLVPHNL HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCE MVFDGWDSILGGKRGGQYRPEYEPYADFLRTVVQTTHNSCVIITSREQPEGLNILSAGGA EEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCE VIFPLGGLMEGAIELLQHHQLTFDAQQWITLVNQYGGNPLFLNMAANFIHELFAGDVGEF EEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCHHHH LASGTLVAGEFAPLVTQWLKQISTLEQILIKSLATKVQGLTRQEILLQLASDAANGDILA HHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH ALLSLKRRGLIETMKDSELERFYLQPVILKCVQRLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]