| Definition | Bacteroides fragilis NCTC 9343 chromosome, complete genome. |
|---|---|
| Accession | NC_003228 |
| Length | 5,205,140 |
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The map label for this gene is rpoB
Identifier: 60683450
GI number:
Start: 4718525
End: 4722337
Strand: Reverse
Name: rpoB
Synonym: BF4015
Alternate gene names: NA
Gene position: NA
Preceding gene: 60683451
Following gene: 60683449
Centisome position: NA
GC content: NA
Gene sequence:
>3813_bases ATGTCTTCAAATACTGTAAATCAAAGAGTTAATTTTGCTTCGACTAAGAATCCGCTTGAATATCCGGATTTCCTGGAAGT ACAATTGAAGTCATTCCAAGACTTTCTACAACTAGATACCCCACCTGAGAAGCGTAAAAAAGAGGGATTGTATAAAGTAT TTGCCGAAAACTTCCCAATTGCCGACACAAGAAACAATTTTGTTCTTGAGTTTCTGGACTATTATATTGATCCGCCGCGC TATACCATTGATGATTGTATAGAGCGTGGGCTCACATATAGTGTTCCATTGAAAGCGAAACTCAAGCTTTACTGTACAGA CCCCGATCATGAGGATTTCGATACAGTGATTCAAGATGTGTTCCTTGGTCCTATACCTTACATGACTGACAAGGCAACTT TTGTCATCAATGGTGCTGAGCGTGTAGTTGTGTCGCAGCTTCACCGTTCTCCGGGCGTATTCTTCGGTCAGAGTGTACAT GCTAATGGTACAAAGTTGTACTCAGCCCGTATCATCCCGTTTAAGGGATCATGGATTGAGTTCGCTACCGATATTAACAA CGTAATGTACGCTTATATTGATCGTAAGAAGAAATTGCCTGTTACTACGCTGTTAAGAGCTATCGGCTTTGAGAACGACA AGGACATTCTTGAGATTTTTAACCTGGCTGAAGATGTGAAGGTTAATAAGACTAATCTCAAGAAGGTAGTAGGTCGTAAA CTGGCTGCGCGTGTCTTGAAAACCTGGATTGAAGATTTCGTTGATGAAGATACCGGTGAAGTTGTTTCTATTGAACGTAA TGAAGTCATTATCGACCGTGAAACAGTAATCGAACCGGAACATATAGATGAAATAATTGACTCGGGCGTTCAAAACATCC TTATTCACAAGGAAGAACCGAACCAGTCCGACTACTCTATTATATATAATACCCTTCAGAAGGACCCGAGTAACTCGGAA AAGGAGGCTGTGCTTTATATCTACCGTCAGTTGCGTAATGCAGACCCTGCCGATGATGCCAGTGCCCGTGAAGTTATTAA TAACCTGTTCTTCTCTGAAAAACGGTATGACCTTGGTGATGTAGGTCGTTATAGAATCAATAAGAAATTGAACCTGACGA CAGACATGGACGTGCGTGTCCTCACTAAAGAAGATATTATCGAGATCATCAAATATCTGATTGAGCTGATTAACTCAAAA GCAGATGTAGATGATATCGACCACTTGAGCAACCGTCGCGTACGTACTGTAGGCGAACAGTTGTCCAATCAGTTCGCTGT CGGTTTGGCACGTATGTCACGTACCATCCGCGAACGAATGAACGTTCGTGACAATGAGGTGTTTACTCCGATTGACTTGA TCAATGCGAAGACTATTTCTTCTGTGATCAATTCATTCTTCGGAACTAACGCATTGTCACAGTTTATGGACCAGACAAAC CCGTTGGCTGAAATCACTCACAAACGTCGTATGTCTGCTCTTGGTCCTGGTGGTTTGTCTCGTGAACGTGCCGGATTTGA GGTTCGTGACGTTCACTATACACACTACGGACGCCTTTGTCCGATTGAAACACCGGAAGGTCCGAATATCGGTTTGATTT CGTCACTTTGTGTGTTTGCCAAGATCAATGATCTCGGCTTTATTGAAACTCCTTACCGTAAGGTAGATAACGGAAAGGTA GATCTGTCTGAGAACGGACTCGTTTACCTGACGGCTGAGGAAGAAGAAGCTAAGATCATAGCACAGGGTAATGCTCCGTT GAATGATGACGGTACATTTATCCGTAATAAGGTTAAGTCTCGTCAGGATGCCGATTATCCGGTTGTAGAACCTTCGGAAG TAGAGTTGATGGACGTTGCTCCTCAACAGATTGCTTCTATCGCTGCATCTTTGATTCCCTTCCTTGAACATGATGACGCT AACCGTGCGTTGATGGGATCGAACATGATGCGCCAGGCTGTTCCTTTGCTGAGAAGTGAAGCTCCAATCGTAGGTACAGG TATTGAACGCCAGTTGGTACGTGATTCACGTACTCAGATTGCTGCCGAAGGTGATGGAGTGATTGATTTTGTAGATGCTA CTACTATTCGTATTCTATACGATCGTACAGAAGATGAAGAGTTTGTAAGTTTTGAGCCGGCATTAAAAGAATATAGAATA CCGAAGTTCCGTAAAACGAACCAGAATATGACAATCGACCTTCGGCCAACTTGCAATAAAGGTGATCGTGTGACGAAAGG TCAGATTCTGACAGAAGGTTATTCTACTGAAAATGGAGAACTCGCTTTGGGTAAGAATCTGTTGGTTGCTTACATGCCTT GGAAAGGTTATAATTACGAGGATGCTATCGTGTTGAATGAACGTGTGGTTCGTGAAGACTTGCTGACTTCAGTACACGTA GAAGAGTATTCACTCGAAGTTCGTGAAACCAAGCGAGGAATGGAAGAGTTGACTTCTGATATTCCTAACGTGAGTGAGGA AGCCACTAAGGATTTGGACGAGAATGGTATCGTACGTGTCGGTGCACGTATTCAGCCGGGTGATATATTGATTGGTAAGA TTACACCGAAAGGTGAATCTGATCCTTCTCCGGAAGAAAAATTGCTTCGTGCTATCTTTGGTGATAAAGCCGGTGATGTG AAAGATGCTTCTTTGAAAGCATCTCCTTCTCTGAAGGGGGTAATTATTGATAAGAAACTGTTCTCACGTGTCATCAAGAA TCGTAGTTCTAAGTTGGCTGATAAGGCGTTGCTTCCGAAAATTGACGATGAATTTGAGTCTAAGGTAGCTGACTTGAAAC GTATCTTGGTAAAGAAATTGATGGTATTGACAGAAGGAAAGGTATCTCAGGGCGTGAAAGACTACTTGGGAGCTGAAGTC ATAGCTAAAGGCTCTAAGTTTAGTGCTTCTGACTTCGATTCACTTGATTTCACTGCGATTCAGCTGAGCGACTGGACCAA TGATGATCATGCGAATGGTATGATTCGTGACTTGATCCTGAACTTTATCAAGAAGTACAAAGAACTTGATGCTGAACTGA AGCGTAAAAAGTTCGCTATCACAATTGGTGATGAACTGCCTGCAGGTATCATTCAGATGGCGAAAGTATATATTGCTAAA AAACGTAAGATTGGTGTAGGTGATAAGATGGCCGGACGTCACGGTAATAAAGGTATTGTGTCACGTGTTGTTCGTCAAGA AGACATGCCGTTCCTTGAAGATGGAACTCCGGTAGACATTGTATTGAACCCGTTGGGTGTGCCTTCTCGTATGAATATCG GTCAGATTTTTGAGGCTGTTCTCGGACGTGCCGGAAAGAATTTGGGTGTGAAGTTCGCTACGCCGATTTTTGACGGTGCA ACTTTGGATGACTTGAACGAGTGGACAGACAAAGCCGGTCTACCACGCTATTGCAAAACTTATCTTTGTGATGGTGGTAC AGGCGAACGCTTTGACCAACCAGCAACCGTAGGTGTTACCTATATGTTGAAACTCGGTCACATGGTTGAAGACAAGATGC ACGCACGTTCTATCGGACCATACTCATTGATTACTCAGCAACCTCTTGGTGGTAAAGCTCAGTTTGGTGGTCAGCGTTTC GGAGAGATGGAGGTTTGGGCACTCGAAGGTTTCGGTGCATCGCATATTCTCCAGGAGATTCTGACAATCAAGTCGGACGA CGTTGTTGGACGTTCTAAGGCTTACGAAGCCATTGTAAAGGGCGAACCCATGCCACAGCCGGGTATTCCGGAATCTCTGA ACGTGTTGTTGCACGAATTAAGAGGATTGGGCCTGAGCATCAATTTGGAATAA
Upstream 100 bases:
>100_bases AGCCTGGTTATCAGGTAATTCGGTTAAGAATCCTTCACAAGAGGATTCTTAACCTTTTTGTGTATATATTTAAAATTAAG TTCTCCAAATTCATTGACAG
Downstream 100 bases:
>100_bases TGAACTAATGTGCCAATATGCCAATGTATCGATCAAGGTACATTGGCTGTGGCATTTCATAATTAGCATATTTTCTTATT GGCACATTGGCATCAGCCAA
Product: DNA-directed RNA polymerase subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>1270_residues MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNFVLEFLDYYIDPPR YTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDVFLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVH ANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVVGRK LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEPNQSDYSIIYNTLQKDPSNSE KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSK ADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVDNGKV DLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKSRQDADYPVVEPSEVELMDVAPQQIASIAASLIPFLEHDDA NRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQIAAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRI PKFRKTNQNMTIDLRPTCNKGDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDV KDASLKASPSLKGVIIDKKLFSRVIKNRSSKLADKALLPKIDDEFESKVADLKRILVKKLMVLTEGKVSQGVKDYLGAEV IAKGSKFSASDFDSLDFTAIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYIAK KRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLGVKFATPIFDGA TLDDLNEWTDKAGLPRYCKTYLCDGGTGERFDQPATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF GEMEVWALEGFGASHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE
Sequences:
NA
Specific function: NA
COG id: COG0085
COG function: function code K; DNA-directed RNA polymerase, beta subunit/140 kD subunit
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA